Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tspOProbable tspO; PMID: 11097914 best DB hits: BLAST: pir:G69987; hypothetical protein ytaB - Bacillus subtilis -----; E=3e-08 gb:AAF01195.1; AF179401_4 (AF179401) TspO [Sinorhizobium meliloti]; E=2e-07 pir:A57438; tryptophan-rich sensory protein [similarity] -; E=4e-04 PFAM: PF01061; ABC-2 type transporter; E=0.09. (131 aa)    
Predicted Functional Partners:
RB11284
Hypothetical protein.
       0.631
RB11287
Hypothetical protein.
       0.618
phr
DNA photolyase; May have a photoreceptor function. Binds DNA; probably functions as a transcriptional repressor (By similarity).
 
  
 0.533
RB2078
Conserved hypothetical protein-possibly prolineracemase; PMID: 10984043 best DB hits: BLAST: pir:G83487; hypothetical protein PA1268 [imported] - Pseudomonas; E=6e-68 gb:AAF97423.1; AF195522_1 (AF195522) B-cell mitogen precursor; E=2e-22 embl:CAB71312.1; (AJ130879) proline racemase [Clostridium; E=4e-18 COG: VNG0332C; COG0384 Predicted epimerase, PhzC/PhzF homolog; E=0.002.
   
    0.503
RB12006
Probable G protein-coupled receptor LGR4; PMID: 9849958 best DB hits: BLAST: gb:AAG59625.1; (AF301417) GU1 [Trypanosoma brucei]; E=2e-08 gb:AAF82144.1; AC034256_8 (AC034256) Contains similarity to F-box; E=1e-06 gb:AAC77910.1; (AF061443) G protein-coupled receptor LGR4 [Rattus; E=6e-05.
  
     0.481
RB11283
Hypothetical protein.
       0.475
RB11288
Conserved hypothetical protein; PMID: 11466286 best DB hits: BLAST: pir:F75526; hypothetical protein - Deinococcus radiodurans (strain; E=0.012.
       0.455
RB11289
Hypothetical protein-transmembrane prediction.
       0.439
RB10608
Similar to transposase insG for insertion sequence element IS4; PMID: 11292750 best DB hits: BLAST: swissprot:P03835; YI41_ECOLI INSERTION ELEMENT IS4 HYPOTHETICAL; E=0.030 embl:CAA57483.1; (X81894) ORF [Enterobacter agglomerans]; E=0.064 COG: yi41; COG3385 Predicted transposase; E=0.003.
  
     0.404
RB4306
Conserved hypothetical protein-putative transposase; PMID: 11292750 best DB hits: BLAST: swissprot:P03835; YI41_ECOLI INSERTION ELEMENT IS4 HYPOTHETICAL; E=0.030 embl:CAA57483.1; (X81894) ORF [Enterobacter agglomerans]; E=0.064 COG: yi41; COG3385 Predicted transposase; E=0.003.
  
     0.404
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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