STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB11294PMID: 9282737 PMID: 1971619 best DB hits: BLAST: pir:C75333; general secretion pathway protein E - Deinococcus; E=2e-04 pir:A72329; general secretion pathway protein E - Thermotoga; E=0.002 swissprot:P31599; NFRB_ECOLI BACTERIOPHAGE N4 ADSORPTION PROTEIN B; E=0.014 COG: DR1964; COG2804 Predicted ATPases involved in pili biogenesis, PilB; E=2e-05. (1283 aa)    
Predicted Functional Partners:
pilC
Type IV fimbrial assembly protein PilC; PMID: 1971619 best DB hits: BLAST: pir:A75344; pilin biogenesis protein - Deinococcus radiodurans; E=7e-48 swissprot:P22609; PILC_PSEAE FIMBRIAL ASSEMBLY PROTEIN PILC; E=7e-44 pir:C83078; still frameshift type 4 fimbrial biogenesis protein PilC; E=3e-41 COG: DR1863; COG1459 General secretory pathway protein F; E=6e-49 PFAM: PF00482; Bacterial type II secretion system p; E=1.2e-68.
  
     0.699
RB3484
Type 4 fimbrial assembly protein pilC; PMID: 1971619 PMID: 10984043 best DB hits: BLAST: pir:A75344; pilin biogenesis protein - Deinococcus radiodurans; E=4e-52 swissprot:P22609; PILC_PSEAE FIMBRIAL ASSEMBLY PROTEIN PILC; E=3e-48 pir:F82546; fimbrial assembly protein XF2538 [imported] - Xylella; E=3e-47 COG: DR1863; COG1459 General secretory pathway protein F; E=4e-53 PFAM: PF01961; Integral membrane protein DUF110; E=0.0065 PF00482; Bacterial type II secretion system p; E=5.1e-83.
  
     0.665
hofF
General secretion pathway protein F-putative pilus protein; PMID: 1640836 PMID: 93174466 best DB hits: BLAST: gb:AAC70103.1; (AF074613) type II secretion protein [Escherichia; E=3e-15 pir:C82327; MSHA biogenesis protein MshG VC0406 [imported] - Vibrio; E=9e-15 gb:AAA96018.1; (U35009) MshG [Vibrio cholerae]; E=3e-13 COG: VC0406; COG1459 General secretory pathway protein F; E=8e-16 PFAM: PF00482; Bacterial type II secretion system p; E=3.4e-05.
  
     0.659
pilT-2
Twitching mobility protein PilT; PMID: 1676385 best DB hits: BLAST: pir:C70365; twitching motility protein PilT - Aquifex aeolicus; E=7e-81 pir:B75333; twitching mobility protein - Deinococcus radiodurans; E=9e-81 embl:CAB56295.1; (AJ249385) twitching motility protein; E=2e-77 COG: aq_745; COG2805 Predicted ATPases involved in pili biogenesis, PilT; E=6e-82 TM0837; COG2804 Predicted ATPases involved in pili biogenesis, PilB; E=4e-27 PFAM: PF00437; Bacterial type II secretion syst; E=0.18 PF02283; Cobinamide kinase / cobinamide p; E=0.86 PF00437; Bacterial type II secretion syst; E=1.5e-51.
  
     0.651
pilT
Twitching motility protein PilT; PMID: 8100347 PMID: 1676385 best DB hits: BLAST: pir:F82321; twitching motility protein PilT VC0462 [imported] -; E=2e-65 pir:C70365; twitching motility protein PilT - Aquifex aeolicus; E=1e-63 swissprot:P24559; PILT_PSEAE TWITCHING MOBILITY PROTEIN -----; E=3e-61 COG: VC0462; COG2805 Predicted ATPases involved in pili biogenesis, PilT; E=1e-66 XF1517; COG2804 Predicted ATPases involved in pili biogenesis, PilB; E=2e-22 PFAM: PF00155; Aminotransferase class-I; E=0.3 PF00448; SRP54-type protein, GTPase do; E=0.32 PF00437; Bacterial type II secretion s; E [...]
  
     0.634
hofB
PMID: 9537320 best DB hits: BLAST: pir:B70428; general secretion pathway protein E - Aquifex aeolicus; E=7e-21 pir:C75333; general secretion pathway protein E - Deinococcus; E=6e-19 pir:C83313; probable type II secretion protein PA2677 [imported] -; E=1e-18 COG: aq_1474; COG2804 Predicted ATPases involved in pili biogenesis, PilB; E=6e-22 PFAM: PF00437; Bacterial type II secretion system p; E=0.00098.
  
     0.610
RB3482
General secretion pathway protein E; PMID: 1944223 best DB hits: BLAST: pir:D82672; general secretory pathway protein E XF1517 [imported] -; E=1e-114 swissprot:P31742; GSPE_XANCP GENERAL SECRETION PATHWAY PROTEIN E; E=1e-110 pir:T12056; xpsE protein - Xanthomonas campestris pv. campestris; E=1e-110 COG: XF1517; COG2804 Predicted ATPases involved in pili biogenesis, PilB; E=1e-115 PFAM: PF00004; ATPase family associated with variou; E=0.13 PF00448; SRP54-type protein, GTPase domain; E=0.038 PF00437; Bacterial type II secretion system p; E=8.8e-156.
  
     0.599
RB8494
Best DB hits: BLAST: pir:A75321; prepilin peptidase, type IV - Deinococcus radiodurans; E=4e-16 swissprot:P72640; LEP4_SYNY3 TYPE 4 PREPILIN-LIKE PROTEINS LEADER; E=3e-15 ddbj:BAA83726.1; (AB017809) prepilin peptidase [Escherichia coli]; E=3e-14 COG: DR2065; COG1989 Signal peptidase, cleaves prepilin-like proteins; E=4e-17 PFAM: PF01478; Type III leader peptidase famil; E=8.9e-28.
  
     0.575
RB11292
Hypothetical protein.
       0.572
RB11293
Hypothetical protein.
       0.572
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.