STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB11312Hypothetical protein. (388 aa)    
Predicted Functional Partners:
RB11310
Hypothetical protein.
       0.773
RB11311
Hypothetical protein.
       0.773
RB11303
Transposase homolog; Best DB hits: BLAST: gb:AAG18661.1; (AE004971) Vng0021h [Halobacterium sp. NRC-1]; E=4e-23 gb:AAG18694.1; (AE004974) Vng0056h [Halobacterium sp. NRC-1]; E=4e-21 pir:T44318; transposase homolog [imported] - Vibrio cholerae -----; E=3e-16.
  
     0.684
RB4826
Conserved hypothetical protein; Best DB hits: BLAST: gb:AAG18661.1; (AE004971) Vng0021h [Halobacterium sp. NRC-1]; E=4e-23 gb:AAG18694.1; (AE004974) Vng0056h [Halobacterium sp. NRC-1]; E=4e-21 pir:T44318; transposase homolog [imported] - Vibrio cholerae -----; E=3e-16.
  
     0.684
RB4303
Conserved hypothetical protein-putative transposase; PMID: 11016950 best DB hits: BLAST: gb:AAG18661.1; (AE004971) Vng0021h [Halobacterium sp. NRC-1]; E=8e-22 gb:AAG18694.1; (AE004974) Vng0056h [Halobacterium sp. NRC-1]; E=8e-20 pir:T44318; transposase homolog [imported] - Vibrio cholerae -----; E=4e-15.
  
     0.683
RB11309
Hypothetical protein-transmembrane prediction.
       0.620
RB10446
Beta keto-acyl synthase; Best DB hits: BLAST: ddbj:BAA89384.1; (AB025342) ORF10 [Moritella marina]; E=3e-37 pir:T30185; hypothetical protein 7 - Shewanella sp ----- gb:; E=3e-36 pir:T37057; probable multi-domain beta keto-acyl synthase -; E=8e-35 COG: DR1945; COG0331 (acyl-carrier-protein) S-malonyltransferase; E=3e-17 Rv3391_1; COG0451 Nucleoside-diphosphate-sugar epimerases; E=2e-14 BH2492; COG0331 (acyl-carrier-protein) S-malonyltransferase; E=2e-13 PFAM: PF00109; Beta-ketoacyl synthase, N-ter; E=7.7e-09 PF02801; Beta-ketoacyl synthase, C-ter; E=7.6e-61 PF00109; Beta-ketoacyl syntha [...]
  
     0.565
RB4273
Peroxidase; Best DB hits: BLAST: ddbj:BAA77283.1; (AB013135) DyP [Galactomyces geotrichum]; E=4e-22 gb:AAB58908.1; (U77073) peroxidase [Polyporaceae sp.]; E=8e-22 pir:D75610; probable peroxidase - Deinococcus radiodurans (strain; E=8e-18 COG: DRA0145; COG2837 Predicted iron-dependent peroxidase; E=7e-19.
  
     0.543
RB9670
Best DB hits: BLAST: pir:E81971; hypothetical protein NMA0532 [imported] - Neisseria; E=0.079 pir:G81862; conserved hypothetical protein NMA1675 [imported] -; E=0.079 pir:F81882; hypothetical protein NMA1155 [imported] - Neisseria; E=0.17.
  
     0.542
RB9433
Best DB hits: BLAST: pir:S76975; hypothetical protein - Synechocystis sp. (strain PCC; E=1e-10 pir:S74748; hypothetical protein slr0981 - Synechocystis sp. (strain; E=2e-08 pir:B70303; hypothetical protein aq_037 - Aquifex aeolicus -----; E=4e-08.
  
     0.512
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.