STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB11334Serine/threonine-protein kinase; PMID: 3291115 best DB hits: BLAST: gb:AAF73695.1; (AE002226) serinethreonine-protein kinase; E=1e-35 pir:G71532; probable threoninetyrosine-specific protein kinase (EC; E=8e-34 pir:C72120; st protein kinase - Chlamydophila pneumoniae (strain; E=5e-33 COG: CT301_1; COG0515 Serine/threonine protein kinases; E=8e-35 PFAM: PF00069; Protein kinase domain; E=2.6e-37 PF00400; WD domain, G-beta repeat; E=0.013 PF00515; TPR Domain; E=0.0067. (1899 aa)    
Predicted Functional Partners:
RB3245
Protein phosphatase 1; PMID: 11298281 best DB hits: BLAST: gb:AAF81068.1; AF223364_3 (AF223364) protein phosphatase 1; E=3e-27 pir:E71538; hypothetical protein CT259 - Chlamydia trachomatis; E=5e-26 embl:CAA10712.1; (AJ132604) pppL protein [Lactococcus lactis]; E=2e-25 COG: CT259; COG0631 Protein serine/threonine phosphatases; E=4e-27 PFAM: PF00481; Protein phosphatase 2C; E=1.2e-09.
 
 
 0.837
Pph1
Probable protein phosphatase 1; PMID: 11298281 best DB hits: BLAST: gb:AAF81068.1; AF223364_3 (AF223364) protein phosphatase 1; E=9e-32 pir:E71538; hypothetical protein CT259 - Chlamydia trachomatis; E=4e-28 pir:H75265; conserved hypothetical protein - Deinococcus radiodurans; E=5e-28 COG: CT259; COG0631 Protein serine/threonine phosphatases; E=4e-29 PFAM: PF00481; Protein phosphatase 2C; E=4.9e-09.
 
 
 0.836
rpoA-2
PMID: 9835038 best DB hits: BLAST: swissprot:O50634; RPOA_BACHD DNA-DIRECTED RNA POLYMERASE ALPHA; E=2e-09 swissprot:Q9Z3E7; RPOA_XANCP DNA-DIRECTED RNA POLYMERASE ALPHA; E=4e-09 gb:AAD00325.2; (U79735) RNA polymerase ALPHA subunit [Xanthomonas; E=4e-09 COG: BH0162; COG0202 DNA-directed RNA polymerase alpha subunit/40 kD; E=2e-10 PFAM: PF00515; TPR Domain; E=0.87 PF01000; Bacterial RNA polymerase, alpha; E=6.5e-12.
   
 0.832
ppkA-2
Probable serine/threonine protein kinase PpkA; PMID: 99426839 best DB hits: BLAST: gb:AAC16938.1; (AC002338) putative protein kinase [Arabidopsis; E=3e-14 ddbj:BAA83688.1; (AB011967) OsPK4 [Oryza sativa]; E=8e-14 gb:AAD03499.2; (AF035395) serinethreonine protein kinase PpkA; E=1e-12 COG: PA0074; COG0515 Serine/threonine protein kinases; E=2e-13 PFAM: PF00069; Protein kinase domain; E=2.3e-28.
  
     0.775
RB419
Probable serine/threonine-protein kinase; PMID: 7768349 best DB hits: BLAST: swissprot:Q11053; PKNH_MYCTU PROBABLE SERINETHREONINE-PROTEIN; E=5e-14 pir:T42076; protein kinase homolog - Streptomyces coelicolor -----; E=2e-13 pir:H69878; probable protein kinase (EC 2.7.1.-) yloP - Bacillus; E=4e-13 COG: Rv1266c; COG0515 Serine/threonine protein kinases; E=5e-15 PFAM: PF00069; Protein kinase domain; E=3.3e-32.
  
     0.774
RB11331
Probable glutathione-regulated potassium-efflux system protein KefB; PMID: 2046548 PMID: 8412700 best DB hits: BLAST: pir:T35377; probable membrane protein - Streptomyces coelicolor; E=4e-08 pir:S76244; hypothetical protein - Synechocystis sp. (strain PCC; E=6e-06 pir:S76018; hypothetical protein - Synechocystis sp. (strain PCC; E=3e-04 COG: sll0261; COG1226 Kef-type K+ transport systems, predicted; E=6e-07 DR2336; COG1226 Kef-type K+ transport systems, predicted NAD-binding; E=4e-04 MJ0138.1; COG1226 Kef-type K+ transport systems, predicted; E=7e-04 PFAM: PF01408; Oxidoreductase famil [...]
       0.620
iuvY
Probable transcriptional activator protein ilvY; PMID: 10588699 PMID: 9556617 best DB hits: BLAST: swissprot:P05827; ILVY_ECOLI TRANSCRIPTIONAL ACTIVATOR PROTEIN; E=1e-05 pir:S30671; ilvC activator - Escherichia coli; E=1e-05 gb:AAG58968.1; AE005608_9 (AE005608) positive regulator for ilvC; E=1e-05 COG: ilvY; COG0583 Transcriptional regulator; E=9e-07 PFAM: PF00126; Bacterial regulatory helix-turn-heli; E=6.1e-15; Belongs to the LysR transcriptional regulatory family.
       0.610
RB11329
Hypothetical protein.
       0.610
RB11337
Probable transposase; PMID: 8041625 best DB hits: BLAST: pir:S35005; probable transposase - Acetobacter xylinus insertion; E=9e-21 pir:S35004; probable transposase - Acetobacter xylinus insertion; E=4e-20 gb:AAD47597.1; AF144038_1 (AF144038) putative transposase; E=2e-18 COG: sll1716; COG3293 Predicted transposase; E=2e-13 PFAM: PF01511; Transposase; E=1.2e-09 PF01675; Transposase; E=2.5e-05.
       0.517
RB5593
Serine/threonine-protein kinase; PMID: 7768349 best DB hits: BLAST: gb:AAF73695.1; (AE002226) serinethreonine-protein kinase; E=7e-39 pir:G71532; probable threoninetyrosine-specific protein kinase (EC; E=3e-38 pir:C72120; st protein kinase - Chlamydophila pneumoniae (strain; E=4e-37 COG: CT301_1; COG0515 Serine/threonine protein kinases; E=3e-39 PFAM: PF00069; Protein kinase domain; E=2.2e-27 PF00515; TPR Domain; E=0.89 PF02018; Cellulose binding domain; E=0.037.
 
 
0.474
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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