Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RB11337Probable transposase; PMID: 8041625 best DB hits: BLAST: pir:S35005; probable transposase - Acetobacter xylinus insertion; E=9e-21 pir:S35004; probable transposase - Acetobacter xylinus insertion; E=4e-20 gb:AAD47597.1; AF144038_1 (AF144038) putative transposase; E=2e-18 COG: sll1716; COG3293 Predicted transposase; E=2e-13 PFAM: PF01511; Transposase; E=1.2e-09 PF01675; Transposase; E=2.5e-05. (289 aa)    
Predicted Functional Partners:
RB8773
Conserved hypothetical protein; Best DB hits: BLAST: gb:AAG20870.1; (AE005155) Vng6208c [Halobacterium sp. NRC-1]; E=3e-04 pir:E75514; B-cell receptor associated protein-related protein -; E=8e-04 pir:S75156; hypothetical protein slr1768 - Synechocystis sp. (strain; E=8e-04 COG: DR0482; COG0330 Membrane protease subunits, stomatin/prohibitin; E=8e-05.
  
     0.523
RB11334
Serine/threonine-protein kinase; PMID: 3291115 best DB hits: BLAST: gb:AAF73695.1; (AE002226) serinethreonine-protein kinase; E=1e-35 pir:G71532; probable threoninetyrosine-specific protein kinase (EC; E=8e-34 pir:C72120; st protein kinase - Chlamydophila pneumoniae (strain; E=5e-33 COG: CT301_1; COG0515 Serine/threonine protein kinases; E=8e-35 PFAM: PF00069; Protein kinase domain; E=2.6e-37 PF00400; WD domain, G-beta repeat; E=0.013 PF00515; TPR Domain; E=0.0067.
       0.517
RB8770
Conserved hypothetical protein; Best DB hits: BLAST: gb:AAG20870.1; (AE005155) Vng6208c [Halobacterium sp. NRC-1]; E=7e-05 pir:E75514; B-cell receptor associated protein-related protein -; E=0.016 COG: DR0482; COG0330 Membrane protease subunits, stomatin/prohibitin; E=0.002.
  
     0.501
ydcC-3
H repeat-associated protein-putative transposase; PMID: 9097039 best DB hits: BLAST: gb:AAG55028.1; AE005248_9 (AE005248) putative receptor; E=4e-61 gb:AAG54539.1; AE005200_1 (AE005200) Z0271 gene product; E=1e-60 swissprot:P28917; YDCC_ECOLI H REPEAT-ASSOCIATED PROTEIN IN; E=1e-60 PFAM: PF01811; Transposase; E=1.3e-65.
  
     0.460
ydcC
H repeat-associated protein ydcC; PMID: 8041625 best DB hits: BLAST: gb:AAG55028.1; AE005248_9 (AE005248) putative receptor; E=4e-61 gb:AAG54539.1; AE005200_1 (AE005200) Z0271 gene product; E=1e-60 swissprot:P28917; YDCC_ECOLI H REPEAT-ASSOCIATED PROTEIN IN; E=1e-60 PFAM: PF01811; Transposase; E=1.3e-65.
  
     0.460
RB1286
Putative transposase; PMID: 10708371 best DB hits: BLAST: gb:AAG55028.1; AE005248_9 (AE005248) putative receptor; E=4e-62 swissprot:P28917; YDCC_ECOLI H REPEAT-ASSOCIATED PROTEIN IN; E=5e-62 gb:AAG54539.1; AE005200_1 (AE005200) Z0271 gene product; E=9e-62 PFAM: PF01811; Transposase; E=5.2e-67.
  
     0.459
ydcC-2
H repeat-associated protein ydcC; PMID: 2542093 best DB hits: BLAST: gb:AAG55028.1; AE005248_9 (AE005248) putative receptor; E=4e-61 gb:AAG54539.1; AE005200_1 (AE005200) Z0271 gene product; E=1e-60 swissprot:P28917; YDCC_ECOLI H REPEAT-ASSOCIATED PROTEIN IN; E=1e-60 PFAM: PF01811; Transposase; E=1.3e-65.
  
     0.457
RB807
Putative transposase; PMID: 10708371 best DB hits: BLAST: gb:AAG55028.1; AE005248_9 (AE005248) putative receptor; E=4e-61 gb:AAG54539.1; AE005200_1 (AE005200) Z0271 gene product; E=1e-60 swissprot:P28917; YDCC_ECOLI H REPEAT-ASSOCIATED PROTEIN IN; E=1e-60 PFAM: PF01811; Transposase; E=1.3e-65.
  
     0.457
iuvY
Probable transcriptional activator protein ilvY; PMID: 10588699 PMID: 9556617 best DB hits: BLAST: swissprot:P05827; ILVY_ECOLI TRANSCRIPTIONAL ACTIVATOR PROTEIN; E=1e-05 pir:S30671; ilvC activator - Escherichia coli; E=1e-05 gb:AAG58968.1; AE005608_9 (AE005608) positive regulator for ilvC; E=1e-05 COG: ilvY; COG0583 Transcriptional regulator; E=9e-07 PFAM: PF00126; Bacterial regulatory helix-turn-heli; E=6.1e-15; Belongs to the LysR transcriptional regulatory family.
       0.419
RB11329
Hypothetical protein.
       0.419
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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