STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB11360Hypothetical protein. (121 aa)    
Predicted Functional Partners:
RB11345
Hypothetical protein.
       0.773
RB11348
Hypothetical protein.
       0.773
RB11352
Best DB hits: BLAST: pir:A81289; hypothetical protein Cj1433c [imported] - Campylobacter; E=6e-07 pir:E71020; hypothetical protein PH1458 - Pyrococcus horikoshii; E=0.017 gb:AAD45550.1; U70376_15 (U70376) SpcY [Streptomyces netropsis]; E=0.061 COG: PH1458; COG1964 Predicted Fe-S oxidoreductases; E=0.002.
       0.773
RB11354
Hypothetical protein.
       0.773
RB11356
Probable N-acetylgalactosaminyltransferase; PMID: 7515051 best DB hits: BLAST: gb:AAA39802.1; (L30104) N-acetylgalactosaminyltransferase [Mus; E=2e-06 PFAM: PF00535; Glycosyl transferase; E=1.6e-06.
       0.773
RB11363
Hypothetical protein.
       0.523
RB11366
Similar to transcription regulator; PMID: 3119860 best DB hits: BLAST: pir:F70829; probable transcription regulator Rv0474 - Mycobacterium; E=0.015 embl:CAC04034.1; (AL391406) putative DNA-binding protein; E=0.10 pir:S25724; hypothetical protein 1 (phbC 5' region) - Rhodococcus; E=0.12 COG: Rv0474; COG1396 Predicted transcriptional regulators; E=0.001 PFAM: PF01381; Helix-turn-helix; E=2.9e-13.
       0.523
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.