STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RB11366Similar to transcription regulator; PMID: 3119860 best DB hits: BLAST: pir:F70829; probable transcription regulator Rv0474 - Mycobacterium; E=0.015 embl:CAC04034.1; (AL391406) putative DNA-binding protein; E=0.10 pir:S25724; hypothetical protein 1 (phbC 5' region) - Rhodococcus; E=0.12 COG: Rv0474; COG1396 Predicted transcriptional regulators; E=0.001 PFAM: PF01381; Helix-turn-helix; E=2.9e-13. (182 aa)    
Predicted Functional Partners:
RB11363
Hypothetical protein.
  
  
 0.800
estB
Probable esterase; PMID: 8190066 best DB hits: BLAST: pir:S43880; esterase - Spirulina platensis ----- gb:; E=2e-09 pir:S75304; serine esterase - Synechocystis sp. (strain PCC 6803); E=1e-06 pir:F81704; serine esterase, probable TC0413 [imported] - Chlamydia; E=0.002 COG: sll1284; COG0400 Predicted esterase; E=1e-07 PFAM: PF02230; Phospholipase/Carboxylesterase; E=0.27.
  
     0.619
RB172
Probable transposase; PMID: 10601203 best DB hits: BLAST: gb:AAF60967.1; AF188737_2 (AF188737) transposase [Escherichia; E=6e-41 gb:AAB07489.2; (U66426) transposase [Acidithiobacillus; E=1e-30 pir:A47041; probable transposase - Alcaligenes eutrophus insertion; E=4e-26 PFAM: PF01610; Transposase; E=4.2e-28.
  
     0.568
RB11345
Hypothetical protein.
       0.523
RB11348
Hypothetical protein.
       0.523
RB11352
Best DB hits: BLAST: pir:A81289; hypothetical protein Cj1433c [imported] - Campylobacter; E=6e-07 pir:E71020; hypothetical protein PH1458 - Pyrococcus horikoshii; E=0.017 gb:AAD45550.1; U70376_15 (U70376) SpcY [Streptomyces netropsis]; E=0.061 COG: PH1458; COG1964 Predicted Fe-S oxidoreductases; E=0.002.
  
    0.523
RB11354
Hypothetical protein.
       0.523
RB11356
Probable N-acetylgalactosaminyltransferase; PMID: 7515051 best DB hits: BLAST: gb:AAA39802.1; (L30104) N-acetylgalactosaminyltransferase [Mus; E=2e-06 PFAM: PF00535; Glycosyl transferase; E=1.6e-06.
       0.523
RB11360
Hypothetical protein.
       0.523
RB11367
Hypothetical protein; Best DB hits: PFAM: PF00515; TPR Domain; E=0.017.
       0.488
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.