STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RB11367Hypothetical protein; Best DB hits: PFAM: PF00515; TPR Domain; E=0.017. (1274 aa)    
Predicted Functional Partners:
RB11370
Hypothetical protein; Best DB hits: BLAST: embl:CAC04034.1; (AL391406) putative DNA-binding protein; E=0.048 pir:S25724; hypothetical protein 1 (phbC 5' region) - Rhodococcus; E=0.048 ddbj:BAB07268.1; (AP001519) immunity repressor protein; E=0.057 COG: BH3549; COG1396 Predicted transcriptional regulators; E=0.006 PFAM: PF01381; Helix-turn-helix; E=3.5e-10.
       0.664
hsdR-2
HsdR; Subunit R is required for both nuclease and ATPase activities, but not for modification.
       0.664
polA
DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family.
  
    0.547
RB11363
Hypothetical protein.
       0.488
RB11366
Similar to transcription regulator; PMID: 3119860 best DB hits: BLAST: pir:F70829; probable transcription regulator Rv0474 - Mycobacterium; E=0.015 embl:CAC04034.1; (AL391406) putative DNA-binding protein; E=0.10 pir:S25724; hypothetical protein 1 (phbC 5' region) - Rhodococcus; E=0.12 COG: Rv0474; COG1396 Predicted transcriptional regulators; E=0.001 PFAM: PF01381; Helix-turn-helix; E=2.9e-13.
       0.488
RB11373
Hypothetical protein.
       0.452
yma
Conserved hypothetical protein; Best DB hits: BLAST: gb:AAB91575.2; (AF242881) yma [Agrobacterium tumefaciens]; E=2e-32.
       0.452
hsdS-2
Probable HsdS polypeptide, part of CfrA family; PMID: 2585490 PMID: 9837717 best DB hits: BLAST: gb:AAC37110.1; (L77118) M. jannaschii predicted coding region; E=3e-12 swissprot:Q58615; YC18_METJA HYPOTHETICAL PROTEIN MJ1218 -----; E=3e-12 embl:CAA35604.1; (X17591) HsdS polypeptide, part of CfrA family; E=1e-06 COG: MJECL41; COG0732 Restriction endonuclease S subunits; E=3e-13 PFAM: PF01420; Type I restriction modification; E=0.00019.
       0.452
RB11379
PMID: 8921897 best DB hits: BLAST: pir:D82522; type I restriction-modification system DNA methylase; E=4e-58 gb:AAC37111.1; (L77118) type I restriction enyzme ECOR1243 I M; E=4e-56 embl:CAA68057.1; (X99719) Sty SBLI [Salmonella enterica]; E=1e-54 COG: XF2742; COG0286 Type I restriction-modification system; E=4e-59 PFAM: PF02506; Type I restriction modification s; E=1e-34 PF02384; N-6 DNA Methylase; E=4.3e-10.
       0.452
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.