Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RB11370Hypothetical protein; Best DB hits: BLAST: embl:CAC04034.1; (AL391406) putative DNA-binding protein; E=0.048 pir:S25724; hypothetical protein 1 (phbC 5' region) - Rhodococcus; E=0.048 ddbj:BAB07268.1; (AP001519) immunity repressor protein; E=0.057 COG: BH3549; COG1396 Predicted transcriptional regulators; E=0.006 PFAM: PF01381; Helix-turn-helix; E=3.5e-10. (118 aa)    
Predicted Functional Partners:
hsdR-2
HsdR; Subunit R is required for both nuclease and ATPase activities, but not for modification.
       0.779
RB11367
Hypothetical protein; Best DB hits: PFAM: PF00515; TPR Domain; E=0.017.
       0.664
estB
Probable esterase; PMID: 8190066 best DB hits: BLAST: pir:S43880; esterase - Spirulina platensis ----- gb:; E=2e-09 pir:S75304; serine esterase - Synechocystis sp. (strain PCC 6803); E=1e-06 pir:F81704; serine esterase, probable TC0413 [imported] - Chlamydia; E=0.002 COG: sll1284; COG0400 Predicted esterase; E=1e-07 PFAM: PF02230; Phospholipase/Carboxylesterase; E=0.27.
  
     0.628
RB172
Probable transposase; PMID: 10601203 best DB hits: BLAST: gb:AAF60967.1; AF188737_2 (AF188737) transposase [Escherichia; E=6e-41 gb:AAB07489.2; (U66426) transposase [Acidithiobacillus; E=1e-30 pir:A47041; probable transposase - Alcaligenes eutrophus insertion; E=4e-26 PFAM: PF01610; Transposase; E=4.2e-28.
  
     0.591
hsdS-2
Probable HsdS polypeptide, part of CfrA family; PMID: 2585490 PMID: 9837717 best DB hits: BLAST: gb:AAC37110.1; (L77118) M. jannaschii predicted coding region; E=3e-12 swissprot:Q58615; YC18_METJA HYPOTHETICAL PROTEIN MJ1218 -----; E=3e-12 embl:CAA35604.1; (X17591) HsdS polypeptide, part of CfrA family; E=1e-06 COG: MJECL41; COG0732 Restriction endonuclease S subunits; E=3e-13 PFAM: PF01420; Type I restriction modification; E=0.00019.
  
    0.526
RB11379
PMID: 8921897 best DB hits: BLAST: pir:D82522; type I restriction-modification system DNA methylase; E=4e-58 gb:AAC37111.1; (L77118) type I restriction enyzme ECOR1243 I M; E=4e-56 embl:CAA68057.1; (X99719) Sty SBLI [Salmonella enterica]; E=1e-54 COG: XF2742; COG0286 Type I restriction-modification system; E=4e-59 PFAM: PF02506; Type I restriction modification s; E=1e-34 PF02384; N-6 DNA Methylase; E=4.3e-10.
       0.520
RB11373
Hypothetical protein.
       0.517
yma
Conserved hypothetical protein; Best DB hits: BLAST: gb:AAB91575.2; (AF242881) yma [Agrobacterium tumefaciens]; E=2e-32.
       0.517
RB3732
Best DB hits: BLAST: pir:S76812; hypothetical protein - Synechocystis sp. (strain PCC; E=3e-33 embl:CAA67986.1; (X99672) devC [Anabaena sp.]; E=3e-32 embl:CAA05976.1; (AJ003195) membrane spanning subunit [Anabaena; E=1e-31 PFAM: PF02687; Predicted permease; E=1.1e-09.
  
    0.517
RB11363
Hypothetical protein.
  
  
 0.499
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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