STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB11397Conserved hypothetical protein; PMID: 9371463 best DB hits: BLAST: pir:B69020; hypothetical protein MTH115 - Methanobacterium; E=2e-17 gb:AAD32774.1; AC007661_11 (AC007661) unknown protein [Arabidopsis; E=4e-09 ddbj:BAA96146.1; (AP002092) ESTs; E=3e-07. (207 aa)    
Predicted Functional Partners:
RB11399
Conserved hypothetical protein; PMID: 8905231 best DB hits: BLAST: pir:S75732; hypothetical protein slr0919 - Synechocystis sp. (strain; E=1e-14 ddbj:BAB10296.1; (AB026650) gene_id:MPF21.11~pir S75732~similar; E=3e-13 pir:H82154; conserved hypothetical protein VC1812 [imported] -; E=6e-07 COG: slr0919; COG3011 Uncharacterized BCR; E=1e-15.
 
     0.861
RB11395
Conserved hypothetical protein; PMID: 9384377 best DB hits: BLAST: pir:G69987; hypothetical protein ytaB - Bacillus subtilis -----; E=2e-08 gb:AAF01195.1; AF179401_4 (AF179401) TspO [Sinorhizobium meliloti]; E=8e-08 pir:A57438; tryptophan-rich sensory protein [similarity] -; E=9e-05 PFAM: PF01061; ABC-2 type transporter; E=0.13.
 
     0.637
phr-2
Deoxyribodipyrimidine photolyase; PMID: 7813451 PMID: 2668276 best DB hits: BLAST: swissprot:P12769; PHR_METTH DEOXYRIBODIPYRIMIDINE PHOTOLYASE (DNA; E=3e-58 gb:AAF81696.1; AF246697_1 (AF246697) CPD-photolyase [Fowlpox; E=1e-54 swissprot:P34205; PHR_CARAU DEOXYRIBODIPYRIMIDINE PHOTOLYASE (DNA; E=6e-54 COG: MTH904; COG0415 Deoxyribodipyrimidine photolyase; E=3e-59 PFAM: PF00875; DNA photolyase; E=0.0034.
 
     0.523
RB12006
Probable G protein-coupled receptor LGR4; PMID: 9849958 best DB hits: BLAST: gb:AAG59625.1; (AF301417) GU1 [Trypanosoma brucei]; E=2e-08 gb:AAF82144.1; AC034256_8 (AC034256) Contains similarity to F-box; E=1e-06 gb:AAC77910.1; (AF061443) G protein-coupled receptor LGR4 [Rattus; E=6e-05.
  
     0.483
phr-3
Probable deoxyribodipyrimidine photolyase; PMID: 7813451 PMID: 2668276 best DB hits: BLAST: pir:A83065; hypothetical protein PA4657 [imported] - Pseudomonas; E=4e-47 swissprot:P12769; PHR_METTH DEOXYRIBODIPYRIMIDINE PHOTOLYASE (DNA; E=6e-41 swissprot:P34205; PHR_CARAU DEOXYRIBODIPYRIMIDINE PHOTOLYASE (DNA; E=4e-37 COG: PA4657; COG3380 Predicted NAD/FAD-dependent oxidoreductase; E=3e-48 MTH904; COG0415 Deoxyribodipyrimidine photolyase; E=5e-42 sll1135; COG3380 Predicted NAD/FAD-dependent oxidoreductase; E=1e-21 PFAM: PF00875; DNA photolyase; E=6.3e-06 PF02254; KTN NAD-binding domain; E= [...]
 
     0.479
RB10608
Similar to transposase insG for insertion sequence element IS4; PMID: 11292750 best DB hits: BLAST: swissprot:P03835; YI41_ECOLI INSERTION ELEMENT IS4 HYPOTHETICAL; E=0.030 embl:CAA57483.1; (X81894) ORF [Enterobacter agglomerans]; E=0.064 COG: yi41; COG3385 Predicted transposase; E=0.003.
  
     0.410
RB4306
Conserved hypothetical protein-putative transposase; PMID: 11292750 best DB hits: BLAST: swissprot:P03835; YI41_ECOLI INSERTION ELEMENT IS4 HYPOTHETICAL; E=0.030 embl:CAA57483.1; (X81894) ORF [Enterobacter agglomerans]; E=0.064 COG: yi41; COG3385 Predicted transposase; E=0.003.
  
     0.410
RB4322
Conserved hypothetical protein-putative transposase; PMID: 11292750 best DB hits: BLAST: swissprot:P03835; YI41_ECOLI INSERTION ELEMENT IS4 HYPOTHETICAL; E=0.030 embl:CAA57483.1; (X81894) ORF [Enterobacter agglomerans]; E=0.064 COG: yi41; COG3385 Predicted transposase; E=0.003.
  
     0.410
RB5348
Similar to transposase; PMID: 11292750 best DB hits: BLAST: swissprot:P03835; YI41_ECOLI INSERTION ELEMENT IS4 HYPOTHETICAL; E=0.030 embl:CAA57483.1; (X81894) ORF [Enterobacter agglomerans]; E=0.064 COG: yi41; COG3385 Predicted transposase; E=0.003.
  
     0.410
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
Server load: low (22%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.