STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nfiProbable endonuclease V (deoxyinosine 3endonuclease); PMID: 20365717 best DB hits: BLAST: pir:E75309; conserved hypothetical protein - Deinococcus radiodurans; E=2e-34 pir:T35251; probable endonuclease - Streptomyces coelicolor -----; E=3e-04 pir:A82625; endonuclease V (deoxyinosine 3'endonuclease) XF1892; E=0.005 COG: DR2162; COG1515 Deoxyinosine 3'endonuclease (endonuclease V); E=2e-35. (174 aa)    
Predicted Functional Partners:
arr1
Similar to phosrestin; PMID: 7929436 best DB hits: BLAST: swissprot:P51486; ARR1_CALVI PHOSRESTIN II (ARRESTIN A) (ARRESTIN; E=0.15 swissprot:P15372; ARRA_DROME PHOSRESTIN II (ARRESTIN A) (ARRESTIN; E=0.89.
       0.773
RB11420
Hypothetical protein.
       0.687
RB9588
Conserved hypothetical protein; Best DB hits: BLAST: embl:CAB62700.1; (AL133422) hypothetical protein SCM1.42c; E=7e-34 gb:AAF12648.1; AE001826_117 (AE001826) hypothetical protein; E=4e-33.
  
     0.652
rsr
60-kDa SS-A/Ro ribonucleoprotein homolog; PMID: 10567266 PMID: 10766734 best DB hits: BLAST: swissprot:Q9RUW8; RO60_DEIRA 60-KDA SS-ARO RIBONUCLEOPROTEIN; E=2e-17 gb:AAC53142.1; (U66843) Mus musculus 60kDa SS-ARo; E=1e-11 pir:T36919; hypothetical protein SCI7.23c - Streptomyces coelicolor; E=1e-11.
 
     0.608
uroD
Uroporphyrinogen III synthase, uroporhyrinogen decarboxylase; Catalyzes the decarboxylation of four acetate groups of uroporphyrinogen-III to yield coproporphyrinogen-III.
  
    0.594
RB4714
Conserved hypothetical protein; PMID: 97000351 best DB hits: BLAST: embl:CAB61595.1; (AL133210) hypothetical protein SCG11A.14; E=3e-96 gb:AAG57184.1; AE005439_3 (AE005439) orf, hypothetical protein; E=1e-69 swissprot:P33348; YEHL_ECOLI HYPOTHETICAL 42.4 KD PROTEIN IN; E=3e-69 COG: yehL; COG0714 MoxR-like ATPases; E=3e-70.
  
     0.551
kptA-2
RNA 2-phosphotransferase; Removes the 2'-phosphate from RNA via an intermediate in which the phosphate is ADP-ribosylated by NAD followed by a presumed transesterification to release the RNA and generate ADP-ribose 1''-2''- cyclic phosphate (APPR>P). May function as an ADP-ribosylase.
 
     0.530
kptA
Probable RNA 2-phosphotransferase; PMID: 9915792 best DB hits: BLAST: swissprot:Q9I778; KPTA_PSEAE PROBABLE RNA 2'-PHOSPHOTRANSFERASE; E=3e-10 pir:S56556; hypothetical 24.6K protein (iadA-mcrD intergenic region); E=6e-09 swissprot:P39380; KPTA_ECOLI RNA 2'-PHOSPHOTRANSFERASE; E=6e-09 COG: PA0054; COG1859 Uncharacterized ACR; E=3e-11 PFAM: PF01885; Domain of unknown function DUF60; E=6.1e-16.
 
     0.510
RB9664
PMID: 8830057 best DB hits: BLAST: gb:AAD05198.1; (U43163) inter-alpha-trypsin inhibitor family; E=3e-24 ddbj:BAA07602.1; (D38595) inter-alpha-trypsin inhibitor family; E=4e-24 ddbj:BAA07536.1; (D38535) PK-120 precursor [Homo sapiens]; E=8e-24 COG: sll0103; COG2304 Protein containing von Willebrand factor (vWF) type; E=1e-04 PFAM: PF02138; Beige/BEACH domain; E=0.089 PF00092; von Willebrand factor type A domain; E=0.084.
  
     0.411
RB4715
Best DB hits: BLAST: pir:T35548; hypothetical protein SC6G3.04 - Streptomyces coelicolor; E=1e-145 embl:CAB61596.1; (AL133210) hypothetical protein SCG11A.15; E=5e-93 swissprot:P33352; YEHP_ECOLI HYPOTHETICAL 42.1 KD PROTEIN IN; E=5e-27.
  
     0.401
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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