Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RB11432Hypothetical protein. (66 aa)    
Predicted Functional Partners:
RB11431
Hypothetical protein.
       0.648
RB11434
Hypothetical protein.
       0.634
RB11436
Hypothetical protein.
       0.634
RB11438
Conserved hypothetical protein-putative Zn-binding protein; Best DB hits: BLAST: swissprot:P06979; YECA_ECOLI HYPOTHETICAL 25.0 KD PROTEIN IN; E=5e-05 gb:AAG56897.1; AE005412_7 (AE005412) orf, hypothetical protein; E=5e-05 pir:G82437; SecA-related protein VCA0628 [imported] - Vibrio; E=1e-04 COG: yecA; COG3318 Predicted metal-binding protein related to the; E=4e-06 ychJ; COG3012 Uncharacterized BCR; E=4e-04 secA; COG0653 Preprotein translocase subunit SecA (ATPase, RNA; E=8e-04 PFAM: PF02810; SEC-C motif; E=2.2e-06.
       0.504
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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