STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RB11468Hypothetical protein-putative secreted, membrane associated or paryphoplasmic protein. (239 aa)    
Predicted Functional Partners:
RB11463
Hypothetical protein; Best DB hits: PFAM: PF01011; PQQ enzyme repeat; E=0.39.
       0.675
RB11470
Conserved hypothetical protein-putative phospholipid-binding protein; Best DB hits: BLAST: swissprot:O26373; Y273_METTH HYPOTHETICAL PROTEIN MTH273 -----; E=2e-10 swissprot:O67293; YC50_AQUAE HYPOTHETICAL PROTEIN AQ_1250 -----; E=3e-08 swissprot:O58984; YC69_PYRHO HYPOTHETICAL PROTEIN PH1269 -----; E=7e-06 COG: MTH273; COG1881 Phospholipid-binding protein; E=2e-11.
      0.607
RB11471
Hypothetical protein-transmembrane prediction; Best DB hits: BLAST: pir:T05344; hypothetical protein F8B4.40 - Arabidopsis thaliana; E=0.79.
       0.515
RB11473
Hypothetical protein; Best DB hits: PFAM: PF00776; Sigma-70 factor (ECF subfamily); E=2.9e-07.
       0.515
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.