STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RB11482Alkyl sulfatase or beta-lactamase; PMID: 92267380 PMID: 96067120 best DB hits: BLAST: pir:JC1118; alkyl sulfatase (EC 3.1.6.-) - Pseudomonas sp -----; E=1e-60 pir:G83552; probable beta-lactamase PA0740 [imported] - Pseudomonas; E=2e-47 embl:CAA99186.1; (Z74906) ORF YOL164w [Saccharomyces cerevisiae]; E=2e-42 COG: PA0740; COG2015 Alkyl sulfatase and related hydrolases; E=2e-48 aq_1798; COG0491 Zn-dependent hydrolases, including glyoxylases; E=4e-10 PFAM: PF00753; Metallo-beta-lactamase superfamil; E=2.1e-27 PF02151; UvrB/uvrC motif; E=0.2 PF01656; Cobyrinic acid a,c-diamide syntha; E=0.44. (454 aa)    
Predicted Functional Partners:
RB11478
Hypothetical protein-putative transmembrane protein.
       0.773
RB11480
PMID: 8521301 best DB hits: BLAST: pir:C82396; transcription regulator MarR family VCA0955 [imported] -; E=2e-04 gb:AAD05186.1; (AF110185) unknown [Burkholderia pseudomallei]; E=4e-04 pir:F82675; transcription regulator MarREmrR family XF1490; E=7e-04 COG: VCA0955; COG1846 Transcriptional regulators; E=2e-05 PFAM: PF01047; MarR family; E=7.4e-09.
       0.773
atsA-2
Arylsulfatase; PMID: 7744061 best DB hits: BLAST: swissprot:P51691; ARS_PSEAE ARYLSULFATASE (ARYL-SULFATE; E=9e-73 pir:S69336; arylsulfatase (EC 3.1.6.1) - Pseudomonas aeruginosa; E=4e-71 pir:T45548; arylsulfatase (EC 3.1.6.1) [validated] - Klebsiella; E=2e-63 COG: PA0183; COG3119 Arylsulfatase A and related enzymes; E=8e-74 PFAM: PF00884; Sulfatase; E=5.5e-93.
     
 0.628
RB13157
Mucin-desulfating sulfatase; PMID: 9710560 PMID: 10809675 best DB hits: BLAST: gb:AAF72520.1; AF248951_1 (AF248951) mucin-desulfating sulfatase; E=6e-35 gb:AAF55296.1; (AE003712) Sulf1 gene product [Drosophila; E=2e-28 pir:T16584; hypothetical protein K09C4.8 - Caenorhabditis elegans; E=3e-24 COG: yidJ; COG3119 Arylsulfatase A and related enzymes; E=1e-24 BS_yqgS; COG1368 Phosphoglycerol transferase and related proteins,; E=0.007 PFAM: PF02455; Hexon-associated protein (IIIa); E=0.25 PF00884; Sulfatase; E=8e-47.
      
 0.618
arsB-2
Arylsulfatase B [Precursor]; PMID: 1427856 best DB hits: BLAST: swissprot:P33727; ARSB_FELCA ARYLSULFATASE B PRECURSOR (ASB); E=2e-47 pdb:1FSU; 4-Sulfatase (Human); E=3e-47 gb:AAA51779.1; (M32373) arylsulfatase B precursor [Homo sapiens]; E=4e-47 COG: PA0183; COG3119 Arylsulfatase A and related enzymes; E=2e-31 PFAM: PF00884; Sulfatase; E=3.6e-76.
      
 0.618
atsA
Arylsulfatase; PMID: 7744061 best DB hits: BLAST: swissprot:P51691; ARS_PSEAE ARYLSULFATASE (ARYL-SULFATE; E=1e-39 pir:S69336; arylsulfatase (EC 3.1.6.1) - Pseudomonas aeruginosa; E=3e-39 embl:CAA36398.1; (X52150) arylsulphatase a [Homo sapiens]; E=2e-35 COG: PA0183; COG3119 Arylsulfatase A and related enzymes; E=9e-41 PFAM: PF00884; Sulfatase; E=1.3e-43.
      
 0.618
atsA-3
Arylsulfatase; PMID: 7744061 best DB hits: BLAST: swissprot:P51691; ARS_PSEAE ARYLSULFATASE (ARYL-SULFATE; E=2e-61 pir:S69336; arylsulfatase (EC 3.1.6.1) - Pseudomonas aeruginosa; E=2e-60 pir:E70533; probable sulfatase (EC 3.1.6.-) atsB - Mycobacterium; E=7e-53 COG: PA0183; COG3119 Arylsulfatase A and related enzymes; E=2e-62 PFAM: PF00884; Sulfatase; E=3.2e-77.
      
 0.618
mdsA
PMID: 10809675 best DB hits: BLAST: gb:AAF72520.1; AF248951_1 (AF248951) mucin-desulfating sulfatase; E=2e-56 pir:T44602; phosphonate monoester hydrolase (EC 3.1.3.-) PEH; E=3e-30 pir:F83354; probable sulfatase PA2333 [imported] - Pseudomonas; E=1e-26 COG: PA2333; COG3119 Arylsulfatase A and related enzymes; E=9e-28 PAB0793; COG2194 Predicted membrane-associated, metal-dependent; E=9e-08 VC2600; COG3083 Predicted hydrolase of alkaline phosphatase; E=9e-07 PFAM: PF00884; Sulfatase; E=2.6e-65.
      
 0.618
atsA-4
N-acetylgalactosamine 6-sulfatase (GALNS); PMID: 8020961 PMID: 7744061 best DB hits: BLAST: ddbj:BAA04535.1; (D17629) N-acetylgalactosamine 6-sulfate; E=2e-35 gb:AAF63858.1; (AF112242) N-acetylgalactosamine-6-sulfate; E=5e-35 pir:S69336; arylsulfatase (EC 3.1.6.1) - Pseudomonas aeruginosa; E=6e-33 COG: PA0183; COG3119 Arylsulfatase A and related enzymes; E=4e-33 PFAM: PF00884; Sulfatase; E=1.8e-50.
      
 0.618
RB11476
Conserved hypothetical protein-putative acetyltransferase; PMID: 7610040 best DB hits: BLAST: swissprot:P39368; YJHQ_ECOLI HYPOTHETICAL 20.0 KDA PROTEIN IN; E=6e-21 pir:B82297; probable acetyltransferase VC0655 [imported] - Vibrio; E=7e-13 gb:AAK04154.1; AE006244_3 (AE006244) HYPOTHETICAL PROTEIN; E=6e-10 COG: yjhQ; COG3153 Predicted acetyltransferase; E=6e-22 PFAM: PF00583; Acetyltransferase (GNAT) family; E=2.2e-10.
 
     0.544
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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