Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
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Co-occurrence
Co-expression
Experiments
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[Homology]
Score
RB11490Conserved hypothetical protein-putative transmembrane protein; PMID: 11248100 best DB hits: BLAST: gb:AAK04020.1; (AE006230) unknown [Pasteurella multocida]; E=0.010. (181 aa)    
Predicted Functional Partners:
RB11492
Hypothetical protein-putative secreted or transmembrane protein.
       0.773
RB11489
Vulnibactin utilization protein VIUB; PMID: 8698519 PMID: 97000351 best DB hits: BLAST: embl:CAB59476.1; (AL132648) hypothetical protein SCI41.06; E=1e-31 swissprot:Q56743; VIUB_VIBVU VULNIBACTIN UTILIZATION PROTEIN VIUB; E=5e-31 swissprot:Q56646; VIUB_VIBCH VIBRIOBACTIN UTILIZATION PROTEIN VIUB; E=9e-30 COG: VC2210; COG2375 Siderophore-interacting protein; E=9e-31.
  
    0.653
RB11487
Conserved hypothetical protein; PMID: 10984043 best DB hits: BLAST: pir:H83235; hypothetical protein PA3281 [imported] - Pseudomonas; E=0.002 gb:AAK02297.1; (AE006055) unknown [Pasteurella multocida]; E=0.005 pir:E83286; conserved hypothetical protein PA2864 [imported] -; E=0.062 COG: PA2864; COG2259 Predicted membrane protein; E=0.006.
       0.476
RB11488
Putative short chain dehydrogenase; PMID: 97000351 PMID: 8290650 best DB hits: BLAST: embl:CAB82049.1; (AL161803) putative short chain dehydrogenase; E=2e-57 embl:CAB56135.1; (AL117669) putative short chain oxidoreductase; E=8e-53 pir:B83462; probable short-chain dehydrogenase PA1470 [imported] -; E=3e-49 COG: PA1470; COG1028 Dehydrogenases with different specificities (related; E=3e-50 BS_fabG; COG1028 Dehydrogenases with different specificities; E=3e-32 DR1943; COG1028 Dehydrogenases with different specificities (related; E=2e-27 PFAM: PF00106; short chain dehydrogenase; E=1.8e-51 PF [...]
       0.476
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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