STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB11497Conserved hypothetical protein; PMID: 8905231 best DB hits: BLAST: pir:S74850; hypothetical protein slr0865 - Synechocystis sp. (strain; E=4e-24 pir:F70793; hypothetical protein Rv3701c - Mycobacterium; E=5e-23 embl:CAC02633.1; (AL390114) possible hypothetical 35.4 Kd protein; E=3e-22. (245 aa)    
Predicted Functional Partners:
RB11498
Conserved hypothetical protein; PMID: 97000351 best DB hits: BLAST: embl:CAB62702.1; (AL133422) hypothetical protein SCM1.44; E=4e-37 pir:H70793; hypothetical protein Rv3703c - Mycobacterium; E=3e-24 pir:S74705; hypothetical protein slr1303 - Synechocystis sp. (strain; E=3e-21 COG: Rv3703c; COG1262 Uncharacterized BCR; E=3e-25.
  
 0.995
RB4229
Conserved hypothetical protein; PMID: 8843436 best DB hits: BLAST: embl:CAB62702.1; (AL133422) hypothetical protein SCM1.44; E=7e-37 pir:S74705; hypothetical protein slr1303 - Synechocystis sp. (strain; E=1e-20 pir:H70793; hypothetical protein Rv3703c - Mycobacterium; E=1e-19 COG: slr1303; COG1262 Uncharacterized BCR; E=1e-21.
  
 0.980
RB11502
PMID: 92267380 best DB hits: BLAST: pir:JC1118; alkyl sulfatase (EC 3.1.6.-) - Pseudomonas sp -----; E=3e-54 gb:AAG59281.1; AE005641_6 (AE005641) orf, hypothetical protein; E=4e-41 gb:AAC43177.1; (U00006) matches PS00743: Beta-lactamases class B; E=8e-41 COG: yjcS; COG2015 Alkyl sulfatase and related hydrolases; E=8e-42 aq_974; COG0491 Zn-dependent hydrolases, including glyoxylases; E=0.002 PFAM: PF00753; Metallo-beta-lactamase superf; E=1.2e-29.
       0.588
RB11496
Hypothetical protein.
       0.574
RB11494
Conserved hypothetical protein; PMID: 10086841 PMID: 10086842 PMID: 10192928 best DB hits: BLAST: ddbj:BAB04024.1; (AP001508) BH0305~unknown conserved protein in; E=4e-31 gb:AAG59409.1; AE005653_10 (AE005653) putative oxidoreductase; E=2e-23 swissprot:P39315; YTFG_ECOLI HYPOTHETICAL 29.7 KD PROTEIN IN; E=4e-23 COG: BH0305; COG0702 Predicted nucleoside-diphosphate-sugar epimerases; E=3e-32 PFAM: PF01073; 3-beta hydroxysteroid dehydrogenase; E=0.023.
       0.570
RB4436
Hypothetical protein-transmembrane region and signal peptide prediction.
   
    0.543
RB11493
Hypothetical protein.
       0.433
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.