Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RB11512Conserved hypothetical protein-putative phenazine biosynthesis protein PhzF; PMID: 8586283 best DB hits: BLAST: ddbj:BAB04002.1; (AP001508) BH0283~unknown conserved protein; E=5e-62 pir:E83199; conserved hypothetical protein PA3578 [imported] -; E=1e-57 pir:A83301; hypothetical protein PA2770 [imported] - Pseudomonas; E=3e-56 COG: BH0283; COG0384 Predicted epimerase, PhzC/PhzF homolog; E=5e-63 PFAM: PF02567; Phenazine biosynthesis-like protein; E=7.7e-27. (277 aa)    
Predicted Functional Partners:
RB11509
Hypothetical protein.
       0.514
RB11510
PMID: 1435734 best DB hits: BLAST: ddbj:BAB05504.1; (AP001513) chaperonin involved in protein; E=5e-21 swissprot:P37584; CSAA_BACSU CSAA PROTEIN ----- pir: E69607; E=1e-20 pir:A83243; CsaA protein PA3221 [imported] - Pseudomonas aeruginosa; E=1e-20 COG: BH1785; COG0073 EMAP domain; E=5e-22 PFAM: PF01588; Putative tRNA binding domain; E=2.3e-13.
       0.514
RB11515
Conserved hypothetical protein; PMID: 10952301 best DB hits: BLAST: pir:H82471; hypothetical protein VCA0329 VCA0298 VCA0343; E=1e-09.
       0.490
RB11506
Probable 4-oxalocrotonate tautomerase; PMID: 1732207 PMID: 8547259 best DB hits: BLAST: swissprot:P45418; YKDK_ERWCH HYPOTHETICAL 8.1 KD PROTEIN IN KDGK; E=3e-06 pir:H81078; 4-oxalocrotonate tautomerase, probable NMB1474; E=8e-06 gb:AAG42543.1; (AY013584) putative isomerase [Sinorhizobium; E=2e-04 COG: NMB1474; COG1942 Uncharacterized protein, 4-oxalocrotonate; E=8e-07 PFAM: PF01361; Tautomerase enzyme; E=1.2e-06.
       0.489
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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