Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RB11529Probable beta-1,4 N-acetylgalactosaminyltransferase; PMID: 1601877 best DB hits: BLAST: gb:AAA35516.1; (M83651) beta-1,4; E=6e-07 ddbj:BAA04632.1; (D17809) beta-4N-acetylgalactosaminyltransferase; E=2e-06 gb:AAA39802.1; (L30104) N-acetylgalactosaminyltransferase [Mus; E=2e-06 COG: BS_yveT; COG0463 Glycosyltransferases involved in cell wall; E=0.003 PFAM: PF00535; Glycosyl transferase; E=5.2e-08. (254 aa)    
Predicted Functional Partners:
RB11527
Probable N-acetylgalactosaminyltransferase; PMID: 7515051 best DB hits: BLAST: gb:AAA39802.1; (L30104) N-acetylgalactosaminyltransferase [Mus; E=2e-06 PFAM: PF00535; Glycosyl transferase; E=6.9e-07.
 
    
0.799
RB11522
Hypothetical protein.
       0.773
RB11524
Conserved hypothetical protein-putative Fe-S oxidoreductase; PMID: 10688204 best DB hits: BLAST: pir:A81289; hypothetical protein Cj1433c [imported] - Campylobacter; E=2e-07 pir:E71020; hypothetical protein PH1458 - Pyrococcus horikoshii; E=5e-04 gb:AAD45550.1; U70376_15 (U70376) SpcY [Streptomyces netropsis]; E=0.077 COG: PH1458; COG1964 Predicted Fe-S oxidoreductases; E=5e-05.
       0.773
RB11525
Hypothetical protein.
       0.773
RB11533
Conserved hypothetical protein; PMID: 9477341 best DB hits: BLAST: embl:CAC00604.2; (AL359776) hypothetical protein L5649.08; E=3e-07 pir:T20368; hypothetical protein D2045.9 - Caenorhabditis elegans; E=0.064 gb:AAD51367.1; AF177203_1 (AF177203) cerebral cell adhesion; E=0.26.
       0.773
RB11537
Hypothetical protein.
       0.768
RB4663
Hypothetical protein-transmembrane prediction.
  
     0.763
RB12633
PMID: 10751411 best DB hits: BLAST: gb:AAD48846.1; AF168362_1 (AF168362) protein associating with; E=3e-05 gb:AAF56739.2; (AE003762) CG12879 gene product [Drosophila; E=4e-05 pir:T15138; hypothetical protein T28F2.4 - Caenorhabditis elegans; E=5e-04 COG: NMB1786; COG2850 Uncharacterized ACR; E=0.007 PFAM: PF02373; jmjC domain; E=0.018.
  
     0.760
RB12720
Probable mannan-binding protein MBP (Lectin); PMID: 10607664 best DB hits: BLAST: gb:AAB94071.1; (AF022226) mannan-binding lectin; collectin; E=0.004 swissprot:P49259; PA2R_BOVIN 180 KD SECRETORY PHOSPHOLIPASE A2; E=0.10 gb:AAA48719.1; (J04028) proteoglycan core protein [Gallus gallus]; E=0.11 PFAM: PF00059; Lectin C-type domain; E=0.0043.
  
     0.744
RB2671
Conserved hypothetical protein; PMID: 7482699 best DB hits: BLAST: ddbj:BAA91718.1; (AK001486) unnamed protein product [Homo; E=0.007 ddbj:BAB08640.1; (AB009048) gene_id:K15E6.5~unknown protein; E=0.012 pir:T00095; hypothetical protein KIAA0470 - human ----- ddbj:; E=0.052 PFAM: PF00498; FHA domain; E=1.8e-12.
  
     0.732
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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