STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB11533Conserved hypothetical protein; PMID: 9477341 best DB hits: BLAST: embl:CAC00604.2; (AL359776) hypothetical protein L5649.08; E=3e-07 pir:T20368; hypothetical protein D2045.9 - Caenorhabditis elegans; E=0.064 gb:AAD51367.1; AF177203_1 (AF177203) cerebral cell adhesion; E=0.26. (445 aa)    
Predicted Functional Partners:
RB11527
Probable N-acetylgalactosaminyltransferase; PMID: 7515051 best DB hits: BLAST: gb:AAA39802.1; (L30104) N-acetylgalactosaminyltransferase [Mus; E=2e-06 PFAM: PF00535; Glycosyl transferase; E=6.9e-07.
     
 0.775
RB11529
Probable beta-1,4 N-acetylgalactosaminyltransferase; PMID: 1601877 best DB hits: BLAST: gb:AAA35516.1; (M83651) beta-1,4; E=6e-07 ddbj:BAA04632.1; (D17809) beta-4N-acetylgalactosaminyltransferase; E=2e-06 gb:AAA39802.1; (L30104) N-acetylgalactosaminyltransferase [Mus; E=2e-06 COG: BS_yveT; COG0463 Glycosyltransferases involved in cell wall; E=0.003 PFAM: PF00535; Glycosyl transferase; E=5.2e-08.
     
 0.775
RB11522
Hypothetical protein.
       0.773
RB11524
Conserved hypothetical protein-putative Fe-S oxidoreductase; PMID: 10688204 best DB hits: BLAST: pir:A81289; hypothetical protein Cj1433c [imported] - Campylobacter; E=2e-07 pir:E71020; hypothetical protein PH1458 - Pyrococcus horikoshii; E=5e-04 gb:AAD45550.1; U70376_15 (U70376) SpcY [Streptomyces netropsis]; E=0.077 COG: PH1458; COG1964 Predicted Fe-S oxidoreductases; E=5e-05.
       0.773
RB11525
Hypothetical protein.
       0.773
RB11537
Hypothetical protein.
       0.768
RB11539
Hypothetical protein.
       0.568
RB11516
Conserved hypothetical protein; PMID: 9868367 best DB hits: BLAST: ddbj:BAB06554.1; (AP001516) BH2835~unknown conserved protein; E=7e-30 gb:AAK04163.1; AE006245_2 (AE006245) conserved hypothetical; E=5e-26 swissprot:P54168; YPGQ_BACSU HYPOTHETICAL 23.1 KD PROTEIN IN; E=8e-26 COG: BH2835; COG1418 Predicted HD superfamily hydrolase; E=7e-31 PFAM: PF01966; HD domain; E=2e-14.
       0.480
RB11518
Probable DNA alkylation repair enzyme; PMID: 10217496 best DB hits: BLAST: embl:CAB40581.1; (AJ010128) DNA alkylation repair enzyme; E=0.079 gb:AAK06230.1; AE006441_8 (AE006441) UNKNOWN PROTEIN [Lactococcus; E=0.13.
       0.480
RB11519
Hypothetical protein.
       0.480
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.