STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RB11545Hypothetical protein-signal peptide and transmembrane prediction. (163 aa)    
Predicted Functional Partners:
RB11548
Hypothetical protein-signal peptide and transmembrane prediction.
       0.499
drga
drgA protein; PMID: 9654132 PMID: 8905231 best DB hits: BLAST: pir:S75047; drgA protein - Synechocystis sp. (strain PCC 6803); E=3e-60 swissprot:Q55233; DRGA_SYNY3 DRGA PROTEIN ----- gb: AAA91952.1; E=7e-56 pir:E82996; probable nitroreductase PA5190 [imported] - Pseudomonas; E=7e-41 COG: slr1719; COG0778 Nitroreductase; E=3e-61 PFAM: PF00881; Nitroreductase family; E=1.3e-44.
       0.403
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.