Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
Experiments
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[Homology]
Score
RB11564Probable permease component of an ABC-transporter; PMID: 9384377 best DB hits: BLAST: pir:H69803; ABC transporter (ATP-binding protein) homolog yfiM -; E=1e-05 ddbj:BAA83956.1; (AB024563) YFIM [Bacillus halodurans]; E=0.83 ddbj:BAB04774.1; (AP001510) BH1055~unknown conserved protein; E=0.83 COG: BS_yfiM; COG0842 Permease component of an ABC-transporter; E=1e-06. (442 aa)    
Predicted Functional Partners:
RB11563
ABC-type multidrug transport system, ATPase component; PMID: 1924314 best DB hits: BLAST: ddbj:BAB04773.1; (AP001510) transposase (08)ABC transporter; E=2e-53 ddbj:BAA83955.1; (AB024563) YFIL [Bacillus halodurans]; E=1e-52 ddbj:BAB05817.1; (AP001514) ABC transporter (ATP-binding protein); E=9e-52 COG: BH1054_2; COG0842 Permease component of an ABC-transporter; E=8e-54 BH2098; COG1131 ABC-type multidrug transport system, ATPase; E=8e-53 ybhF; COG1131 ABC-type multidrug transport system, ATPase component; E=5e-35 PFAM: PF00005; ABC transporter; E=2.1e-54.
 
  
 0.941
RB11946
Best DB hits: BLAST: ddbj:BAB13707.1; (AB040150) thermophilic NAD(P)H-flavin; E=2e-18 pir:B72384; bacterioferritin comigratory proteinNADH dehydrogenase; E=5e-08 swissprot:O26223; Y120_METTH PUTATIVE NADH DEHYDROGENASENAD(P)H; E=0.003 COG: TM0386_2; COG0778 Nitroreductase; E=5e-09 PFAM: PF00881; Nitroreductase family; E=3.3e-13.
 
  
 0.663
natB-2
Best DB hits: BLAST: pir:A75459; sodium extrusion protein NatB - Deinococcus radiodurans; E=2e-15 swissprot:P46904; NATB_BACSU PROTEIN NATB ----- pir: B69666; E=1e-10 ddbj:BAA22237.1; (AB000617) NatB [Bacillus subtilis]; E=5e-05 COG: DR0926; COG1668 ATP-dependent Na+ efflux pump membrane component; E=1e-16 BS_ydiL; COG1266 Predicted metal-dependent membrane protease; E=1e-04 PFAM: PF02517; CAAX amino terminal protease family; E=1.1e-19.
  
  
 0.646
drga
drgA protein; PMID: 9654132 PMID: 8905231 best DB hits: BLAST: pir:S75047; drgA protein - Synechocystis sp. (strain PCC 6803); E=3e-60 swissprot:Q55233; DRGA_SYNY3 DRGA PROTEIN ----- gb: AAA91952.1; E=7e-56 pir:E82996; probable nitroreductase PA5190 [imported] - Pseudomonas; E=7e-41 COG: slr1719; COG0778 Nitroreductase; E=3e-61 PFAM: PF00881; Nitroreductase family; E=1.3e-44.
  
  
 0.580
RB11566
Hypothetical protein.
       0.559
RB11975
Polyketide synthase; PMID: 10662695 PMID: 10649995 best DB hits: BLAST: gb:AAF26921.1; AF210843_18 (AF210843) polyketide synthase [Sorangium; E=0.0 gb:AAF26923.1; AF210843_20 (AF210843) polyketide synthase [Sorangium; E=0.0 gb:AAF62883.1; AF217189_6 (AF217189) epoD [Sorangium cellulosum]; E=0.0 COG: BS_fabD; COG0331 (acyl-carrier-protein) S-malonyltransferase; E=7e-31 PA2965; COG0304 3-oxoacyl-(acyl-carrier-protein) synthase I; E=3e-28 PA5234; COG0604 NADPH:quinone reductase and related Zn-dependent; E=2e-27 PFAM: PF00108; Thiolase, N-terminal domain; E=7.3e-07 PF00109; Beta-ketoacyl s [...]
  
  
 0.500
RB6500
Mycocerosate synthase; PMID: 3880746 best DB hits: BLAST: pir:S72705; mycocerosate synthase (EC 2.3.1.111) - Mycobacterium; E=0.0 pir:H70819; probable polyketide synthase - Mycobacterium tuberculosis; E=0.0 gb:AAF62883.1; AF217189_6 (AF217189) epoD [Sorangium cellulosum]; E=1e-180 COG: PA2402_3; COG1020 Non-ribosomal peptide synthetase modules and related; E=4e-99 BS_ppsD_3; COG1020 Non-ribosomal peptide synthetase modules and; E=4e-92 PA2424_2; COG1020 Non-ribosomal peptide synthetase modules and related; E=1e-91 PFAM: PF00108; Thiolase, N-terminal domain; E=2.7e-06 PF00109; Beta-keto [...]
  
  
 0.496
RB8209
Hypothetical protein; Best DB hits: PFAM: PF02517; CAAX amino terminal protease family; E=0.1.
   
  
 0.481
RB11930
Probable ABC-type transport protein, ATP-binding component; PMID: 8843436 best DB hits: BLAST: embl:CAC08315.1; (AL392149) putative ABC transport system; E=7e-48 pir:C69012; ABC transporter (ATP-binding, daunorubicin resistance) -; E=7e-44 pir:S32908; hypothetical protein 4 - Streptomyces antibioticus; E=4e-43 COG: MTH1093; COG1131 ABC-type multidrug transport system, ATPase; E=7e-45 BH1054_2; COG0842 Permease component of an ABC-transporter; E=7e-34 ybhF; COG1131 ABC-type multidrug transport system, ATPase component; E=9e-34 PFAM: PF01078; Magnesium chelatase, subunit Ch; E=0.047 PF00 [...]
 
  
 0.436
RB1866
PMID: 10382966 best DB hits: BLAST: pir:F72742; probable transport ATP-binding protein APE0471 -; E=3e-34 pir:C72303; ABC transporter, ATP-binding protein - Thermotoga; E=3e-34 gb:AAF81232.1; (AF263012) ABC transporter ATP binding protein; E=5e-34 COG: APE0471; COG1131 ABC-type multidrug transport system, ATPase; E=2e-35 PFAM: PF00448; SRP54-type protein, GTPase domain; E=0.16 PF00005; ABC transporter; E=1.4e-42.
 
  
 0.405
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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