Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RB11629Hypothetical protein. (55 aa)    
Predicted Functional Partners:
RB11628
Hypothetical protein.
       0.773
RB11631
Hypothetical protein; PMID: 8576032 best DB hits: PFAM: PF01418; Helix-turn-helix domain, rpiR; E=0.00028 PF01381; Helix-turn-helix; E=0.27.
       0.544
RB11633
Hypothetical protein.
       0.544
strR
Probable streptomycin biosynthesis operon possible regulatory protein; PMID: 3118332 best DB hits: BLAST: swissprot:P08076; STRR_STRGR STREPTOMYCIN BIOSYNTHESIS OPERON; E=5e-04 pir:C26674; streptomycin resistance hypothetical protein I -; E=0.032 embl:CAB45047.1; (AL078635) putative transcriptional regulator; E=0.12.
       0.544
RB11627
Hypothetical protein.
       0.490
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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