Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RB11647Hypothetical protein. (158 aa)    
Predicted Functional Partners:
RB11649
Hypothetical protein.
       0.773
RB11644
Similar to kinesin Unc104/KIF1a homolog; PMID: 10545495 best DB hits: BLAST: gb:AAF63384.1; (AF245277) kinesin Unc104KIF1a homolog; E=0.024 swissprot:P08799; MYS2_DICDI MYOSIN II HEAVY CHAIN, NON MUSCLE; E=0.12 swissprot:P50533; XCPE_XENLA CHROMOSOME ASSEMBLY PROTEIN XCAP-E; E=0.14.
       0.542
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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