STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
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[Homology]
Score
RB11652Hypothetical protein-signal peptide and transmembrane prediction. (303 aa)    
Predicted Functional Partners:
glpK
Glycerol kinase; Key enzyme in the regulation of glycerol uptake and metabolism. Catalyzes the phosphorylation of glycerol to yield sn- glycerol 3-phosphate; Belongs to the FGGY kinase family.
  
  
 0.587
RB11650
Probable NADH-dependent deydrogenase; PMID: 10086841 best DB hits: BLAST: gb:AAC23913.1; (AF039207) NADH-dependent dehydrogenase homolog; E=6e-10 gb:AAG09709.1; AF218837_4 (AF218837) unknown [Pasteurella; E=3e-09 ddbj:BAB04967.1; (AP001511) NADH-dependent dyhydrogenase; E=4e-09 COG: BH1248; COG0673 Predicted dehydrogenases and related proteins; E=4e-10 PFAM: PF01408; Oxidoreductase family, NAD-bindi; E=2.1e-18.
  
    0.522
ugpQ
Glycerophosphoryl diester phosphodiesterase; PMID: 8012593 best DB hits: BLAST: ddbj:BAB07419.1; (AP001519) glycerophosphoryl diester; E=3e-22 pir:E69827; glycerophosphodiester phosphodiesterase homolog yhdW -; E=5e-21 embl:CAC16430.1; (AL450165) putative secreted hydrolase; E=5e-16 COG: BH3700; COG0584 Glycerophosphoryl diester phosphodiesterase; E=3e-23.
 
      0.493
RB4879
Nodulin-26; PMID: 3822816 PMID: 1390682 best DB hits: BLAST: pir:T05028; nodulin-26-like protein F13C5.80 - Arabidopsis thaliana; E=2e-47 pir:S01444; nodulin-26 precursor - soybean; E=4e-47 swissprot:P08995; NO26_SOYBN NODULIN-26 (N-26) ----- embl:; E=5e-47 COG: PA4034; COG0580 Glycerol uptake facilitator and related permeases; E=2e-25 PFAM: PF00230; Major intrinsic protein; E=6.6e-52.
  
 
 0.434
glpF
PMID: 8436953 best DB hits: BLAST: swissprot:Q9X1E3; GLPF_THEMA PROBABLE GLYCEROL UPTAKE FACILITATOR; E=3e-37 swissprot:P18156; GLPF_BACSU GLYCEROL UPTAKE FACILITATOR PROTEIN; E=4e-33 ddbj:BAB04811.1; (AP001510) glycerol uptake facilitator [Bacillus; E=5e-33 COG: TM1429; COG0580 Glycerol uptake facilitator and related permeases; E=3e-38 PFAM: PF00230; Major intrinsic protein; E=6.1e-57; Belongs to the MIP/aquaporin (TC 1.A.8) family.
  
 
 0.434
glpA
PMID: 7821823 best DB hits: BLAST: pir:C75448; glycerol-3-phosphate dehydrogenase - Deinococcus; E=1e-112 pir:C70130; glycerol-3-phosphate dehydrogenase, anaerobic (glpA); E=4e-83 gb:AAF02807.1; AC009400_3 (AC009400) putative glycerol-3-phosphate; E=2e-82 COG: DR1019; COG0578 Glycerol-3-phosphate dehydrogenase; E=1e-113 PFAM: PF02737; 3-hydroxyacyl-CoA dehydrogenase; E=0.61 PF00070; Pyridine nucleotide-disulphide; E=0.036 PF02032; Phytoene dehydrogenase related; E=0.11; Belongs to the FAD-dependent glycerol-3-phosphate dehydrogenase family.
  
 
 0.410
RB11654
Conserved hypothetical protein-putative carboxypeptidase; PMID: 10984043 best DB hits: BLAST: swissprot:Q09296; YQO6_CAEEL HYPOTHETICAL 55.9 KD PROTEIN EEED8.6; E=3e-08 pir:H83290; conserved hypothetical protein PA2831 [imported] -; E=7e-07 pir:T33157; hypothetical protein F56H1.5 - Caenorhabditis elegans; E=9e-07 COG: PA2831; COG2866 Predicted carboxypeptidase; E=7e-08.
       0.408
RB11975
Polyketide synthase; PMID: 10662695 PMID: 10649995 best DB hits: BLAST: gb:AAF26921.1; AF210843_18 (AF210843) polyketide synthase [Sorangium; E=0.0 gb:AAF26923.1; AF210843_20 (AF210843) polyketide synthase [Sorangium; E=0.0 gb:AAF62883.1; AF217189_6 (AF217189) epoD [Sorangium cellulosum]; E=0.0 COG: BS_fabD; COG0331 (acyl-carrier-protein) S-malonyltransferase; E=7e-31 PA2965; COG0304 3-oxoacyl-(acyl-carrier-protein) synthase I; E=3e-28 PA5234; COG0604 NADPH:quinone reductase and related Zn-dependent; E=2e-27 PFAM: PF00108; Thiolase, N-terminal domain; E=7.3e-07 PF00109; Beta-ketoacyl s [...]
  
  
 0.401
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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