Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RB11704Hypothetical protein. (60 aa)    
Predicted Functional Partners:
RB11703
Hypothetical protein.
       0.773
RB11706
Periplasmic serine proteinase Do; PMID: 3057437 best DB hits: BLAST: pir:F72359; periplasmic serine proteinase Do (EC 3.4.21.-) -; E=9e-41 pir:F81329; serine proteinase (proteinase DO) (EC 3.4.21.-) Cj1228c; E=2e-40 embl:CAA57948.1; (X82628) serine protease [Campylobacter jejuni]; E=2e-40 COG: TM0571; COG0265 Trypsin-like serine proteases, typically; E=8e-42 CT823; COG0265 Trypsin-like serine proteases, typically periplasmic,; E=2e-40 PA0766; COG0265 Trypsin-like serine proteases, typically; E=5e-40 PFAM: PF00089; Trypsin; E=3.8e-20 PF00595; PDZ domain (Also known as DHR or GLG; E=4.9e-06.
       0.773
RB11707
Hypothetical protein.
       0.773
RB11708
Conserved hypothetical protein; PMID: 10360571 best DB hits: BLAST: pir:C72318; hypothetical protein - Thermotoga maritima (strain MSB8); E=7e-04.
       0.610
RB11712
Swi/snf family helicase_2; PMID: 7908117 best DB hits: BLAST: pir:C72027; swisnf family helicase_2 - Chlamydophila pneumoniae; E=1e-50 gb:AAC71234.1; (U39681) ATP-dependent RNA helicase, putative; E=4e-50 ddbj:BAA99057.1; (AP002548) SWISNF family helicase_2; E=5e-50 COG: CPn0849; COG0553 Superfamily II DNA/RNA helicases, SNF2 family; E=1e-51 PFAM: PF01102; Glycophorin A; E=0.41 PF00176; SNF2 and others N-terminal doma; E=6.4e-34 PF00271; Helicase conserved C-terminal d; E=1e-17.
       0.610
RB11701
Probable tetratricopeptide repeat family protein.
       0.513
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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