STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RB11706Periplasmic serine proteinase Do; PMID: 3057437 best DB hits: BLAST: pir:F72359; periplasmic serine proteinase Do (EC 3.4.21.-) -; E=9e-41 pir:F81329; serine proteinase (proteinase DO) (EC 3.4.21.-) Cj1228c; E=2e-40 embl:CAA57948.1; (X82628) serine protease [Campylobacter jejuni]; E=2e-40 COG: TM0571; COG0265 Trypsin-like serine proteases, typically; E=8e-42 CT823; COG0265 Trypsin-like serine proteases, typically periplasmic,; E=2e-40 PA0766; COG0265 Trypsin-like serine proteases, typically; E=5e-40 PFAM: PF00089; Trypsin; E=3.8e-20 PF00595; PDZ domain (Also known as DHR or GLG; E=4.9e-06. (508 aa)    
Predicted Functional Partners:
RB11703
Hypothetical protein.
       0.773
RB11704
Hypothetical protein.
       0.773
RB11707
Hypothetical protein.
       0.773
RB11708
Conserved hypothetical protein; PMID: 10360571 best DB hits: BLAST: pir:C72318; hypothetical protein - Thermotoga maritima (strain MSB8); E=7e-04.
       0.610
RB11712
Swi/snf family helicase_2; PMID: 7908117 best DB hits: BLAST: pir:C72027; swisnf family helicase_2 - Chlamydophila pneumoniae; E=1e-50 gb:AAC71234.1; (U39681) ATP-dependent RNA helicase, putative; E=4e-50 ddbj:BAA99057.1; (AP002548) SWISNF family helicase_2; E=5e-50 COG: CPn0849; COG0553 Superfamily II DNA/RNA helicases, SNF2 family; E=1e-51 PFAM: PF01102; Glycophorin A; E=0.41 PF00176; SNF2 and others N-terminal doma; E=6.4e-34 PF00271; Helicase conserved C-terminal d; E=1e-17.
       0.610
RB11701
Probable tetratricopeptide repeat family protein.
   
   0.546
RB11698
Conserved hypothetical protein; PMID: 8905231 best DB hits: BLAST: swissprot:Q04737; Y751_SYNY3 HYPOTHETICAL 27.8 KD PROTEIN SLR0751; E=0.29 ddbj:BAA76764.1; (AB023137) KIAA0920 protein [Homo sapiens]; E=0.73.
   
   0.435
pnp-2
Polyribonucleotide nucleotidyltransferase; Involved in mRNA degradation. Catalyzes the phosphorolysis of single-stranded polyribonucleotides processively in the 3'- to 5'- direction.
  
    0.422
rsfS
Conserved hypothetical protein; Functions as a ribosomal silencing factor. Interacts with ribosomal protein L14 (rplN), blocking formation of intersubunit bridge B8. Prevents association of the 30S and 50S ribosomal subunits and the formation of functional ribosomes, thus repressing translation.
  
   0.421
lueS
Putative leucyl-tRNA synthetase; PMID: 1317842 best DB hits: BLAST: ddbj:BAB17162.1; (AP002868) putative leucyl-tRNA synthetase; E=0.0 embl:CAB77903.1; (AL161500) putative leucyl tRNA synthetase; E=0.0 gb:AAK04914.1; AE006315_3 (AE006315) leucyl-tRNA synthetase (EC; E=0.0 COG: TP0586; COG0495 Leucyl-tRNA synthetase; E=0.0 PFAM: PF00133; tRNA synthetases class I (I, L; E=1.4e-39; Belongs to the class-I aminoacyl-tRNA synthetase family.
  
    0.401
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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