Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RB11716Hypothetical protein. (74 aa)    
Predicted Functional Partners:
RB11718
Hypothetical protein.
       0.773
RB11720
Hypothetical protein-transmembrane prediction.
       0.563
RB11722
Hypothetical protein; PMID: 9734811 PMID: 95299934 PMID: 9262406 best DB hits: BLAST: ddbj:BAA31647.1; (AB014572) KIAA0672 protein [Homo sapiens]; E=0.007 pir:T12533; hypothetical protein DKFZp434B034.1 - human (fragment); E=0.010.
       0.559
RB11726
Hypothetical protein.
       0.415
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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