STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB11728Conserved hypothetical protein-putative tagatose 3-epimerase; PMID: 8905231 PMID: 10561547 best DB hits: BLAST: swissprot:P73599; YD04_SYNY3 HYPOTHETICAL 32.8 KDA PROTEIN SLL1304; E=1e-25 swissprot:O50580; DT3E_PSECI D-TAGATOSE 3-EPIMERASE -----; E=2e-25 swissprot:Q9WYP7; Y416_THEMA HYPOTHETICAL PROTEIN TM0416 -----; E=3e-14 COG: sll1304; COG1082 Predicted endonucleases; E=1e-26. (295 aa)    
Predicted Functional Partners:
RB11726
Hypothetical protein.
       0.705
RB8781
Putative NADH-dependent oxidoreductase-possiblyglucose-fructose dependent oxidoreductase; Best DB hits: BLAST: embl:CAC14937.1; (AL449216) putative oxidoreductase [Streptomyces; E=8e-20 swissprot:P49305; YMO1_RHIME HYPOTHETICAL 36.4 KD PROTEIN IN; E=1e-12 ddbj:BAB04429.1; (AP001509) BH0710~unknown conserved protein; E=3e-11 COG: BH0710; COG0673 Predicted dehydrogenases and related proteins; E=3e-12 PFAM: PF01408; Oxidoreductase family, NAD-bindi; E=2.3e-26.
  
    0.674
idh
Probable Myo-inositol 2-dehydrogenase; PMID: 1761221 PMID: 112095 best DB hits: BLAST: ddbj:BAA97119.1; (AB035122); E=9e-09 pir:S76068; hypothetical protein - Synechocystis sp. (strain PCC; E=3e-08 swissprot:P26935; MI2D_BACSU MYO-INOSITOL 2-DEHYDROGENASE -----; E=1e-07 COG: slr0338; COG0673 Predicted dehydrogenases and related proteins; E=3e-09 PFAM: PF01408; Oxidoreductase family, NAD-bin; E=6.7e-37.
  
    0.652
RB10089
Conserved hypothetical protein; Best DB hits: BLAST: embl:CAB66289.1; (AL136519) hypothetical protein SCC57A.21c; E=3e-19 swissprot:P42419; IOLI_BACSU IOLI PROTEIN ----- pir: A69646; E=4e-07 ddbj:BAB06034.1; (AP001515) myo-inositol catabolism [Bacillus; E=1e-06 COG: BS_iolI; COG1082 Predicted endonucleases; E=4e-08 PFAM: PF01542; Hepatitis C virus core protei; E=0.23.
  
     0.640
lolI
Probable IolI protein; PMID: 7952181 best DB hits: BLAST: swissprot:P42419; IOLI_BACSU IOLI PROTEIN ----- pir: A69646; E=3e-12 ddbj:BAB06034.1; (AP001515) myo-inositol catabolism [Bacillus; E=1e-08 pir:D83615; hypothetical protein PA0242 [imported] - Pseudomonas; E=1e-05 COG: BS_iolI; COG1082 Predicted endonucleases; E=3e-13.
  
     0.613
RB5053
Conserved hypothetical protein; PMID: 8973323 best DB hits: BLAST: swissprot:P54724; YFIH_BACSU HYPOTHETICAL 34.8 KD PROTEIN IN GLVBC; E=2e-09 pir:T34928; hypothetical protein SC3F9.06 SC3F9.06 - Streptomyces; E=2e-09 ddbj:BAB04968.1; (AP001511) BH1249~unknown conserved protein; E=0.001 COG: BH2317; COG1082 Predicted endonucleases; E=0.006.
  
     0.587
RB8188
Probable glyoxylate-induced protein; Best DB hits: BLAST: gb:AAG54864.1; AE005231_11 (AE005231) glyoxylate-induced protein; E=9e-21 gb:AAG59852.1; AF284750_1 (AF284750) HT036-ISO [Homo sapiens]; E=1e-20 swissprot:Q44015; YGB4_ALCEU HYPOTHETICAL 28.3 KDA PROTEIN IN GBD; E=1e-20 COG: gip; COG1082 Predicted endonucleases; E=3e-21; Belongs to the hyi family.
  
     0.578
RB1533
Conserved hypothetical protein; PMID: 8843436 best DB hits: BLAST: embl:CAB55728.1; (AL117387) hypothetical protein SCF41.25; E=1e-13 ddbj:BAA87752.1; (AB016260) Hypothetical gene [Agrobacterium; E=3e-06.
  
     0.555
RB12038
Best DB hits: BLAST: ddbj:BAB04429.1; (AP001509) BH0710~unknown conserved protein; E=8e-91 pir:T34927; probable oxidoreductase - Streptomyces coelicolor; E=5e-84 embl:CAB88965.1; (AL353864) putative oxidoreductase; E=3e-46 COG: BH0710; COG0673 Predicted dehydrogenases and related proteins; E=7e-92 PFAM: PF01408; Oxidoreductase family, NAD-bin; E=7e-36 PF02894; Oxidoreductase family, C-termi; E=6.8e-06.
 
    0.525
RB3239
Probable D-tagatose 3-epimerase; Best DB hits: BLAST: swissprot:Q9WYP7; Y416_THEMA HYPOTHETICAL PROTEIN TM0416 -----; E=4e-13 swissprot:O50580; DT3E_PSECI D-TAGATOSE 3-EPIMERASE -----; E=8e-11 swissprot:P73599; YD04_SYNY3 HYPOTHETICAL 32.8 KDA PROTEIN SLL1304; E=4e-10 COG: TM0416; COG1082 Predicted endonucleases; E=4e-14.
  
   
0.498
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.