STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RB11752Hypothetical protein-transmembrane prediction. (174 aa)    
Predicted Functional Partners:
rrmA
PMID: 9440525 best DB hits: BLAST: swissprot:P36999; RRMA_ECOLI RIBOSOMAL RNA LARGE SUBUNIT; E=2e-21 gb:AAG56811.1; AE005405_2 (AE005405) putative enzyme [Escherichia; E=1e-20 pir:F83500; rRNA methyltransferase PA1161 [imported] - Pseudomonas; E=4e-20 COG: rrmA; COG0500 SAM-dependent methyltransferases; E=2e-22.
       0.773
RB11757
Hypothetical protein.
       0.572
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.