STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB11766Hypothetical protein. (129 aa)    
Predicted Functional Partners:
RB11767
Hypothetical protein.
       0.718
RB11768
Hypothetical protein.
       0.718
RB11769
PMID: 98010624 best DB hits: BLAST: pir:T08615; aggregation factor core protein MAFp3, isoform C -; E=1e-12 pir:T08617; aggregation factor core protein MAFp3, isoform E -; E=4e-12 pir:T08614; aggregation factor core protein MAFp3, isoform B -; E=5e-08 PFAM: PF00028; Cadherin domain; E=1.6e-12.
     
 0.600
RB11796
Hypothetical protein-signal peptide and transmembrane prediction.
       0.468
RB11765
Hypothetical protein.
       0.417
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.