STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB118Hypothetical protein-transmembrane prediction. (169 aa)    
Predicted Functional Partners:
gspE
PMID: 1588814 best DB hits: BLAST: pir:C75333; general secretion pathway protein E - Deinococcus; E=1e-44 swissprot:P37093; GSPE_VIBCH GENERAL SECRETION PATHWAY PROTEIN E; E=6e-44 pir:C83313; probable type II secretion protein PA2677 [imported] -; E=3e-43 COG: DR1964; COG2804 Predicted ATPases involved in pili biogenesis, PilB; E=1e-45 PFAM: PF00437; Bacterial type II secretion s; E=5.5e-12 PF00448; SRP54-type protein, GTPase do; E=0.15 PF00437; Bacterial type II secretion s; E=5.5e-52.
  
   0.820
RB123
Hypothetical protein-transmembrane prediction; PMID: 1738317.
  
    0.813
RB125
Hypothetical protein-transmembrane prediction.
  
    0.813
RB127
Hypothetical protein-transmembrane prediction.
  
    0.813
RB112
Hypothetical protein-transmembrane prediction.
       0.773
RB115
Hypothetical protein-signal peptide and transmembrane prediction; Best DB hits: PFAM: PF00114; Pilin (bacterial filament); E=0.038.
       0.773
RB117
Hypothetical protein-transmembrane prediction.
       0.773
RB120
Hypothetical protein.
       0.773
RB130
Hypothetical protein-signal peptide and transmembrane prediction.
       0.532
RB110
Iduronate-2-sulfatase; PMID: 8244397 PMID: 8325651 best DB hits: BLAST: gb:AAA16877.1; (L13329) iduronate-2-sulfatase [Homo sapiens]; E=3e-58 gb:AAB33747.1; iduronate-2-sulfatase, IDS {EC 3.1.6.13} [human,; E=1e-57 gb:AAA37880.1; (L07921) iduronate sulfatase [Mus musculus]; E=1e-54 COG: PA0031; COG3119 Arylsulfatase A and related enzymes; E=2e-36 BS_yqgS; COG1368 Phosphoglycerol transferase and related proteins,; E=1e-06 PAB0793; COG2194 Predicted membrane-associated, metal-dependent; E=1e-06 PFAM: PF00884; Sulfatase; E=1.7e-28.
       0.428
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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