STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB11870Conserved hypothetical protein; PMID: 10984043 best DB hits: BLAST: pir:F83601; hypothetical protein PA0356 [imported] - Pseudomonas; E=3e-15 pir:H82508; conserved hypothetical protein VCA0034 [imported] -; E=3e-11 pir:G72324; hypothetical protein - Thermotoga maritima (strain MSB8); E=1e-10 COG: PA0356; COG1639 Uncharacterized BCR; E=3e-16. (354 aa)    
Predicted Functional Partners:
RB11875
Hypothetical protein.
       0.773
flgE
Flagellar hook protein FlgE; PMID: 10368149 best DB hits: BLAST: gb:AAD24206.1; AF049342_4 (AF049342) flagellar hook protein FlgE; E=8e-22 gb:AAA61738.1; (U19712) flagellar hook polypeptide [Borrelia; E=1e-21 gb:AAA91361.1; (U12870) flagellar distal rod protein [Borrelia; E=3e-21 COG: BB0283; COG1749 Flagellar basal body and hook proteins; E=5e-22 PFAM: PF00460; Flagella basal body rod protein; E=3.7e-10.
 
    0.754
flgI
Flagellar P-ring protein; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
 
     0.747
pomA
Chemotaxis pomA protein; PMID: 99254111 best DB hits: BLAST: swissprot:P46826; YTXD_BACME HYPOTHETICAL 29.3 KD PROTEIN IN CCPA; E=9e-35 swissprot:O06873; POMA_VIBAL CHEMOTAXIS POMA PROTEIN -----; E=2e-31 gb:AAD15904.1; (AF069391) sodium-driven polar flagellar protein; E=3e-31 COG: BS_ytxD; COG1291 Flagellar motor component; E=5e-32 PFAM: PF01618; MotA/TolQ/ExbB proton channel famil; E=0.0002.
 
     0.700
flgH
Probable flagellar L-ring protein precursor FlgH; Assembles around the rod to form the L-ring and probably protects the motor/basal body from shearing forces during rotation.
 
     0.679
fliC-2
Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
 
    0.663
FliC
Flagellin; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
 
    0.652
dsbB
PMID: 7628442 PMID: 7542800 best DB hits: BLAST: pir:H72034; thiol-disulfide interchange protein dsbD [imported] -; E=7e-48 pir:G81503; thiol-disulfide interchange protein DSbD homolog CP1086; E=7e-48 pir:C81653; probable thiol-disulfide interchange protein dsbD; E=8e-47 COG: CPn0786; COG0526 Thiol-disulfide isomerase and thioredoxins; E=6e-49 BH1194; COG0785 Cytochrome c biogenesis protein; E=0.002.
       0.651
trmE
Probable tRNA modification GTPase trmE; Exhibits a very high intrinsic GTPase hydrolysis rate. Involved in the addition of a carboxymethylaminomethyl (cmnm) group at the wobble position (U34) of certain tRNAs, forming tRNA- cmnm(5)s(2)U34; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
       0.651
fliC
Flagellin E; Flagellin is the subunit protein which polymerizes to form the filaments of bacterial flagella.
 
    0.651
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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