STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB1189Probable transposase A; PMID: 2824781 best DB hits: BLAST: gb:AAG58100.1; AE005527_3 (AE005527) unknown protein encoded by; E=0.002 gb:AAG53987.1; AF327445_1 (AF327445) putative transposase A; E=0.003 gb:AAF28119.1; AF153317_15 (AF153317) InsA [Shigella; E=0.007 COG: PA1937; COG2963 Transposase; E=0.004 PFAM: PF01381; Helix-turn-helix; E=0.53 PF01527; Transposase; E=6.1e-18. (96 aa)    
Predicted Functional Partners:
RB1190
Transposase; PMID: 7496528 best DB hits: BLAST: gb:AAA88919.1; (U13013) ORFB [Leptospira interrogans]; E=3e-47 gb:AAA88916.1; (U13012) ORFB [Leptospira interrogans]; E=1e-46 gb:AAC05649.1; (AF038931) probable transposase-related protein; E=1e-45 COG: DRB0019.2; COG2801 Putative transposase; E=1e-35 PFAM: PF00665; Integrase core domain; E=4.8e-40.
  
    0.780
RB814
Similar to transposase; PMID: 9761671 PMID: 11823852 best DB hits: BLAST: pir:H83522; conserved hypothetical protein PA0979 [imported] -; E=0.33 PFAM: PF01527; Transposase; E=4.2e-19.
  
     0.586
RB1184
Hypothetical protein.
       0.559
RB1185
Transposase; PMID: 1646375 best DB hits: BLAST: prf:2115270C; transposase [Weeksella zoohelcum]; E=1e-16 swissprot:P55631; Y4QJ_RHISN PUTATIVE TRANSPOSASE Y4QJ -----; E=7e-11 swissprot:P24607; T801_PSESH TRANSPOSASE FOR INSERTION SEQUENCE; E=0.38 PFAM: PF01096; Transcription factor S-II (TFIIS); E=0.19.
       0.559
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.