STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB11906Hypothetical acetyltransferase; PMID: 11078650 best DB hits: BLAST: gb:AAF64052.1; AF242367_1 (AF242367) hypothetical; E=1e-10 embl:CAA63806.1; (X93605) hypothetical protein [Zymomonas; E=4e-08 pir:D72219; conserved hypothetical protein - Thermotoga maritima; E=5e-07 COG: TM1720; COG0454 Histone acetyltransferase HPA2 and related; E=4e-08 PFAM: PF00583; Acetyltransferase (GNAT) family; E=4.9e-11. (154 aa)    
Predicted Functional Partners:
RB11907
Conserved hypothetical protein; Best DB hits: BLAST: gb:AAF00629.1; AC009540_6 (AC009540) unknown protein [Arabidopsis; E=1e-04 gb:AAF61443.1; AF139187_1 (AF139187) root border cell-specific; E=5e-04 pir:E83098; hypothetical protein PA4388 [imported] - Pseudomonas; E=0.020 COG: PA4388; COG0748 Uncharacterized BCR; E=0.002.
       0.779
RB11909
Hypothetical protein-transmembrane prediction; Best DB hits: PFAM: PF01330; RuvA N terminal domain; E=0.83.
       0.773
RB11914
Best DB hits: BLAST: pir:A75012; conserved hypothetical protein PAB1277 - Pyrococcus; E=2e-04 pir:S75346; hypothetical protein slr2013 - Synechocystis sp. (strain; E=0.001 pir:H71125; hypothetical protein PH0774 - Pyrococcus horikoshii; E=0.014 COG: PAB1277; COG1721 Uncharacterized ACR; E=2e-05 PFAM: PF01882; Protein of unknown function DUF58; E=2e-08.
 
     0.651
moxR
Methanol dehydrogenase regulatory protein; PMID: 1657871 PMID: 10086841 best DB hits: BLAST: pir:H72289; hypothetical protein TM1132 - Thermotoga maritima; E=5e-70 ddbj:BAB04323.1; (AP001509) methanol dehydrogenase regulatory; E=4e-69 pir:S75782; methanol dehydrogenase regulatory protein -; E=3e-67 COG: TM1132; COG0714 MoxR-like ATPases; E=5e-71 PFAM: PF00004; ATPase family associated with va; E=0.00074 PF01506; Hepatitis C virus non-structural; E=0.69 PF01078; Magnesium chelatase, subunit Chl; E=8.1e-11.
       0.603
RB11916
Conserved hypothetical protein-putative protease; PMID: 99009353 PMID: 10086841 best DB hits: BLAST: pir:F70464; hypothetical protein aq_1912 - Aquifex aeolicus -----; E=1e-13 ddbj:BAB04325.1; (AP001509) BH0606~unknown conserved protein; E=4e-10 pir:F83287; hypothetical protein PA2873 [imported] - Pseudomonas; E=3e-07 COG: aq_1912; COG1305 Transglutaminase-like enzymes, putative cysteine; E=1e-14 PFAM: PF01841; Transglutaminase-like superfam; E=7e-11.
       0.603
RB11904
Hypothetical protein-putative transmembrane protein.
       0.528
ftsH1
Cell division protein FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; In the central section; belongs to the AAA ATPase family.
   
    0.412
ftsH
PMID: 8444796 best DB hits: BLAST: pir:F72009; cell division protein FtsH, probable CP0857 [imported] -; E=2e-04 pir:D71463; probable ATP-dependent zinc proteinase - Chlamydia; E=4e-04 pir:F81725; cell division protein FtsH, probable TC0229 [imported] -; E=5e-04 COG: CPn0998; COG0465 ATP-dependent Zn proteases; E=2e-05 PFAM: PF01434; Peptidase family M41; E=0.4.
   
    0.412
ftsH-2
Cell division protein FtsH; Acts as a processive, ATP-dependent zinc metallopeptidase for both cytoplasmic and membrane proteins. Plays a role in the quality control of integral membrane proteins; In the central section; belongs to the AAA ATPase family.
   
    0.412
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.