Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
RB11930Probable ABC-type transport protein, ATP-binding component; PMID: 8843436 best DB hits: BLAST: embl:CAC08315.1; (AL392149) putative ABC transport system; E=7e-48 pir:C69012; ABC transporter (ATP-binding, daunorubicin resistance) -; E=7e-44 pir:S32908; hypothetical protein 4 - Streptomyces antibioticus; E=4e-43 COG: MTH1093; COG1131 ABC-type multidrug transport system, ATPase; E=7e-45 BH1054_2; COG0842 Permease component of an ABC-transporter; E=7e-34 ybhF; COG1131 ABC-type multidrug transport system, ATPase component; E=9e-34 PFAM: PF01078; Magnesium chelatase, subunit Ch; E=0.047 PF00 [...] (324 aa)    
Predicted Functional Partners:
RB11929
Probable membrane protein; PMID: 9371463 PMID: 1924314 best DB hits: BLAST: pir:B69012; probable membrane protein MTH1092 - Methanobacterium; E=7e-22 gb:AAB89369.1; (AE000972) daunorubicin resistance membrane; E=5e-14 pir:D75108; daunorubicin resistance membrane protein (drrb) PAB1924; E=9e-14 COG: MTH1092; COG0842 Permease component of an ABC-transporter; E=6e-23.
  
 0.965
cyoE
Protoheme IX farnesyltransferase; Converts heme B (protoheme IX) to heme O by substitution of the vinyl group on carbon 2 of heme B porphyrin ring with a hydroxyethyl farnesyl side group.
       0.782
RB11934
Uncharacterized protein; PMID: 8905231 best DB hits: BLAST: pir:S75621; hypothetical protein sll1898 - Synechocystis sp. (strain; E=7e-06 pir:D70314; heme O oxygenase - Aquifex aeolicus ----- gb:; E=0.14 COG: sll1898; COG1612 Uncharacterized protein required for cytochrome; E=7e-07 PFAM: PF02628; Cytochrome oxidase assembly protei; E=0.0068.
       0.762
RB11936
Hypothetical protein-signal peptide and transmembrane prediction.
       0.746
pbrT
Probable PbrT protein-possibly cytochrome c; PMID: 21429239 best DB hits: BLAST: embl:CAC28871.1; (AJ278984) PbrT protein [Ralstonia; E=0.003 pir:B82990; hypothetical protein PA5248 [imported] - Pseudomonas; E=0.017 swissprot:Q04441; COX2_BACFI CYTOCHROME C OXIDASE POLYPEPTIDE II; E=0.74 COG: PA5248_1; COG2010 Cytochrome c, mono- and diheme variants; E=0.003 PFAM: PF00034; Cytochrome c; E=0.23.
  
    0.746
RB11938
Hypothetical protein-putative membrane protein.
       0.746
RB11928
Hypothetical protein.
       0.671
RB11939
Hypothetical protein.
       0.553
rpsE
30S ribosomal protein S5; With S4 and S12 plays an important role in translational accuracy; Belongs to the universal ribosomal protein uS5 family.
  
    0.487
ksgA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
  
  
 0.469
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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