Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
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[Homology]
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RB11941Conserved hypothetical protein-putative glycosyl transferase; PMID: 8905231 best DB hits: BLAST: pir:A75561; conserved hypothetical protein - Deinococcus radiodurans; E=6e-16 embl:CAA66627.1; (X97985) ORF4 [Staphylococcus aureus]; E=1e-13 pir:S76793; hypothetical protein - Synechocystis sp. (strain PCC; E=3e-11 COG: DR0089; COG0463 Glycosyltransferases involved in cell wall; E=6e-17 MTH548; COG0784 CheY-like receiver domains; E=1e-06 PAB1246; COG1215 Glycosyltransferases, probably involved in cell; E=2e-06 PFAM: PF00535; Glycosyl transferase; E=3.5e-23. (427 aa)    
Predicted Functional Partners:
RB11942
Conserved hypothetical protein-putative acyltransferase; PMID: 7588751 best DB hits: BLAST: pir:S68196; hypothetical protein 9 - Myxococcus xanthus -----; E=5e-06 PFAM: PF01553; Acyltransferase; E=0.013.
 
     0.949
RB11943
Phytoene dehydrogenase; PMID: 7588751 PMID: 2263648 best DB hits: BLAST: swissprot:P54979; CRTJ_MYXXA PHYTOENE DEHYDROGENASE (PHYTOENE; E=2e-50 embl:CAA66626.1; (X97985) ORF3 [Staphylococcus aureus]; E=2e-48 pir:T31463; probable diapophytoene dehydrogenase crtN -; E=9e-47 COG: VNG1684G; COG1233 Phytoene dehydrogenase and related proteins; E=4e-41 PFAM: PF01266; D-amino acid oxidase; E=7.4e-05 PF01494; FAD binding domain; E=1.7e-06 PF02254; KTN NAD-binding domain; E=0.026.
 
     0.942
crtI
Phytoene dehydrogenase; PMID: 8467787 PMID: 7588751 PMID: 8021167 best DB hits: BLAST: pir:S43324; zeta-carotene desaturase - Anabaena sp. (strain PCC; E=2e-82 swissprot:Q02861; CRTI_MYXXA PHYTOENE DEHYDROGENASE (PHYTOENE; E=5e-78 pir:T31463; probable diapophytoene dehydrogenase crtN -; E=5e-67 COG: VNG1684G; COG1233 Phytoene dehydrogenase and related proteins; E=7e-60 PFAM: PF01266; D-amino acid oxidase; E=0.0003 PF01494; FAD binding domain; E=9.7e-07 PF01946; Thi4 family; E=0.0015.
  
     0.736
crtB
Probable phytoene synthase; PMID: 1537409 best DB hits: BLAST: pir:T35400; probable phytoene synthase - Streptomyces coelicolor; E=5e-25 pir:A81118; phytoene synthase, probable NMB1130, NMB1168 [imported]; E=3e-21 swissprot:P37269; CRTB_SYNP7 PHYTOENE SYNTHASE ----- pir:; E=5e-21 COG: NMB1130; COG1562 Phytoene/squalene synthetase; E=3e-22 PFAM: PF00494; Squalene/phytoene synthase; E=0.0026.
 
    0.679
ctrB
Phytoene synthase-related protein; PMID: 20175755 PMID: 1537409 best DB hits: BLAST: pir:H81074; phytoene synthase-related protein NMB1521 [imported] -; E=6e-38 pir:D81868; probable transferase NMA1721 [imported] - Neisseria; E=2e-37 pir:T35399; probable phytoene synthase - Streptomyces coelicolor; E=2e-25 COG: NMB1521; COG1562 Phytoene/squalene synthetase; E=5e-39 PFAM: PF00494; Squalene/phytoene synthase; E=2.8e-23.
 
    0.642
RB11945
Probable aldehyde dehydrogenase (NAD+); PMID: 7934828 PMID: 9384377 PMID: 89229122 best DB hits: BLAST: pir:T03560; probable aldehyde dehydrogenase (NAD+) (EC 1.2.1.3) -; E=1e-31 pir:D83600; probable aldehyde dehydrogenase PA0366 [imported] -; E=3e-31 gb:AAG20575.1; (AE005128) aldehyde dehydrogenase (retinol); AldY1; E=5e-31 COG: PA0366; COG1012 NAD-dependent aldehyde dehydrogenases; E=3e-32 PFAM: PF00171; Aldehyde dehydrogenase family; E=2.5e-20.
       0.586
RB11946
Best DB hits: BLAST: ddbj:BAB13707.1; (AB040150) thermophilic NAD(P)H-flavin; E=2e-18 pir:B72384; bacterioferritin comigratory proteinNADH dehydrogenase; E=5e-08 swissprot:O26223; Y120_METTH PUTATIVE NADH DEHYDROGENASENAD(P)H; E=0.003 COG: TM0386_2; COG0778 Nitroreductase; E=5e-09 PFAM: PF00881; Nitroreductase family; E=3.3e-13.
       0.443
atoC-3
Acetoacetate metabolism regulatory protein atoC; PMID: 9278503 PMID: 9097040 PMID: 8346225 best DB hits: BLAST: pir:F71315; probable response regulatory protein (atoC) - syphilis; E=1e-60 swissprot:P09570; NIFA_AZOVI NIF-SPECIFIC REGULATORY PROTEIN; E=2e-60 pir:A48291; ornithine decarboxylase inhibitor - Escherichia coli; E=3e-60 COG: TP0519; COG2204 AAA superfamily ATPases with N-terminal receiver; E=1e-61 aq_218_2; COG1221 NtrC family transcriptional regulators, ATPase; E=2e-59 hydG; COG2204 AAA superfamily ATPases with N-terminal receiver; E=9e-58 PFAM: PF00004; ATPase family associ [...]
       0.443
amsG
UDP-galactose-lipid carrier transferase; PMID: 7596293 best DB hits: BLAST: swissprot:Q57491; Y872_HAEIN HYPOTHETICAL SUGAR TRANSFERASE HI0872; E=3e-56 swissprot:Q46628; AMSG_ERWAM UDP-GALACTOSE-LIPID CARRIER; E=5e-56 pir:S61891; undecaprenyl-phosphate galactosephosphotransferase (EC; E=5e-56 COG: HI0872; COG2148 Sugar transferases involved in lipopolysaccharide; E=2e-57 PFAM: PF00895; ATP synthase protein 8; E=0.37 PF02397; Bacterial sugar transferase; E=3.6e-89.
  
  
 0.440
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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