STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB1196Similar to ribosomal-protein-alanine acetyltransferase; PMID: 11792869 best DB hits: BLAST: pir:S56597; peptide N-acetyltransferase (EC 2.3.1.-) rimI -; E=0.018 swissprot:P09453; RIMI_ECOLI RIBOSOMAL-PROTEIN-ALANINE; E=0.018 pir:G69233; N-terminal acetyltransferase complex, subunit ARD1 -; E=0.043 COG: rimI; COG0456 Acetyltransferases; E=0.002 DR0188; COG0454 Histone acetyltransferase HPA2 and related; E=0.007 PFAM: PF00583; Acetyltransferase (GNAT) family; E=1e-16. (165 aa)    
Predicted Functional Partners:
RB1198
Hypothetical protein-signal peptide prediction.
       0.548
RB1193
Hypothetical protein-transmembrane prediction.
       0.532
RB1194
Hypothetical protein.
       0.532
guaA-2
GMP synthase; Catalyzes the synthesis of GMP from XMP.
     
 0.424
RB1192
Integrase; PMID: 9082984 best DB hits: BLAST: swissprot:P55632; Y4QK_RHISN PUTATIVE INTEGRASERECOMBINASE Y4QK; E=5e-39 swissprot:P55429; Y4EF_RHISN PUTATIVE INTEGRASERECOMBINASE Y4EF; E=1e-32 prf:2115270D; integrase [Weeksella zoohelcum]; E=1e-22 COG: PAB0255; COG0582 Integrase; E=3e-21 PFAM: PF02899; Phage integrase, N-terminal S; E=0.087 PF00589; Phage integrase family; E=8e-31; Belongs to the 'phage' integrase family.
       0.412
RB1199
Conserved hypothetical protein-putative type IV pilin-related protein; PMID: 10567266 best DB hits: BLAST: pir:C75507; hypothetical protein - Deinococcus radiodurans (strain; E=0.44.
       0.403
RB1191
Probable transposase; Best DB hits: BLAST: swissprot:P55631; Y4QJ_RHISN PUTATIVE TRANSPOSASE Y4QJ -----; E=4e-14 prf:2115270C; transposase [Weeksella zoohelcum]; E=2e-10 pir:S49612; transposase - Escherichia coli; E=0.001.
       0.401
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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