STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB12005Hypothetical protein. (127 aa)    
Predicted Functional Partners:
RB12002
Conserved hypothetical protein; PMID: 8905231 best DB hits: BLAST: pir:F72334; conserved hypothetical protein - Thermotoga maritima; E=2e-16 pir:H75400; conserved hypothetical protein - Deinococcus radiodurans; E=6e-12 pir:S75046; hypothetical protein slr1718 - Synechocystis sp. (strain; E=3e-11 COG: TM0797; COG2045 Uncharacterized ACR; E=2e-17; Belongs to the ComB family.
       0.610
RB12006
Probable G protein-coupled receptor LGR4; PMID: 9849958 best DB hits: BLAST: gb:AAG59625.1; (AF301417) GU1 [Trypanosoma brucei]; E=2e-08 gb:AAF82144.1; AC034256_8 (AC034256) Contains similarity to F-box; E=1e-06 gb:AAC77910.1; (AF061443) G protein-coupled receptor LGR4 [Rattus; E=6e-05.
       0.565
RB11998
Conserved hypothetical protein-putative transcriptional regulator; Best DB hits: BLAST: pir:E82768; conserved hypothetical protein XF0752 [imported] -; E=3e-13 pir:A82381; conserved hypothetical protein VCA1077 [imported] -; E=1e-10 pir:E83347; hypothetical protein PA2395 [imported] - Pseudomonas; E=4e-10 COG: XF0752_2; COG1262 Uncharacterized BCR; E=1e-13.
       0.417
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.