Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RB12019Probable oxidoreductase; PMID: 10984043 PMID: 9560382 best DB hits: BLAST: pir:T35322; hypothetical protein SC5H1.06c - Streptomyces coelicolor; E=1e-20 swissprot:P46336; IOLS_BACSU IOLS PROTEIN (VEGETATIVE PROTEIN 147); E=5e-18 pir:C83506; probable oxidoreductase PA1127 [imported] - Pseudomonas; E=9e-18 COG: BS_iolS; COG0667 Predicted oxidoreductases (related to aryl-alcohol; E=5e-19 Ta0027; COG0656 Aldo/keto reductases, related to diketogulonate; E=5e-07 PFAM: PF00248; Aldo/keto reductase family; E=9e-24. (332 aa)    
Predicted Functional Partners:
RB12015
Hypothetical protein.
       0.485
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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