STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB12056Conserved hypothetical protein containing TPR domain; PMID: 10192388 best DB hits: BLAST: pir:T39943; hypothetical protein SPBC23E6.09 - fission yeast; E=2e-04 pir:C72048; tpr repeats-ct683 hypothetical protein - Chlamydophila; E=0.006 swissprot:P42810; YAG7_PSEAE HYPOTHETICAL PROTEIN PA4667 -----; E=0.24 COG: CPn0693; COG0457 TPR-repeat-containing proteins; E=6e-04 PFAM: PF00515; TPR Domain; E=0.0018 PF00903; Glyoxalase/Bleomycin resistance; E=0.85 PF00515; TPR Domain; E=0.52. (1113 aa)    
Predicted Functional Partners:
RB10916
Outer membrane protein homolog; PMID: 9403685 best DB hits: BLAST: pir:B70199; outer membrane protein homolog - Lyme disease spirochete; E=6e-17 pir:C70412; outer membrane protein - Aquifex aeolicus -----gb:; E=3e-16 gb:AAA96788.1; (U51683) OMP1 precursor [Brucella abortus]; E=2e-15 COG: BB0795; COG0729 Predicted outer membrane protein; E=6e-18 PFAM: PF01103; Bacterial surface antigen; E=1.3e-16.
 
 
 0.889
RB10911
Probable outer membrane protein; Best DB hits: BLAST: gb:AAA96788.1; (U51683) OMP1 precursor [Brucella abortus]; E=1e-14 pir:C70412; outer membrane protein - Aquifex aeolicus ----- gb:; E=5e-12 pir:H83190; probable outer membrane protein PA3648 [imported] -; E=1e-10 COG: aq_1300; COG0729 Predicted outer membrane protein; E=5e-13 PFAM: PF01103; Bacterial surface antigen; E=0.00093.
 
 
 0.887
RB12055
PMID: 10984043 best DB hits: BLAST: pir:G83274; probable tolQ-type transport protein PA2983 [imported] -; E=6e-07 pir:G70470; TolQ homolog - Aquifex aeolicus -----gb:; E=3e-05 pir:D82726; conserved hypothetical protein XF1079 [imported] -; E=7e-04 COG: PA2983; COG0811 Biopolymer transport proteins; E=6e-08 PFAM: PF01618; MotA/TolQ/ExbB proton channel famil; E=6.7e-17.
 
  
 0.876
RB12048
Best DB hits: BLAST: pir:T49412; hypothetical protein B1D4.270 [imported] - Neurospora; E=0.89 PFAM: PF00432; Prenyltransferase and squalene ox; E=0.026.
 
     0.855
RB5205
Probable peptidyl-prolyl cis-trans isomerase; PMID: 2186809 best DB hits: BLAST: ddbj:BAB04896.1; (AP001511) protein secretion (post-translocation; E=2e-08 pir:E71662; protein export protein prsa precursor (prsA) RP576 -; E=3e-05 pir:A83421; peptidyl-prolyl cis-trans isomerase D PA1805 [imported]; E=4e-05 COG: BH1177; COG0760 Parvulin-like peptidyl-prolyl isomerase; E=2e-09 PFAM: PF00639; PPIC-type PPIASE domain; E=2.4e-08.
 
  
 0.787
RB3077
Hypothetical protein-putative cyclic nucleotide-binding protein.
 
  
 0.780
RB8077
Hypothetical protein-signal peptide and transmembrane prediction.
 
   
 0.754
RB1954
Best DB hits: BLAST: pir:T30283; polyketide synthase - Streptomyces sp. (strain MA6548); E=0.11 gb:AAF86396.1; AF235504_17 (AF235504) FkbA [Streptomyces; E=0.11 pir:T30228; polyketide synthase - Streptomyces hygroscopicus -----; E=0.12.
  
     0.749
RB3185
Probable integral membrane protein; PMID: 10688204 best DB hits: BLAST: pir:E71280; probable antibiotic transport protein - syphilis; E=2e-05 pir:B81282; probable integral membrane protein Cj1373 [imported] -; E=3e-04 pir:D70131; conserved hypothetical integral membrane protein BB0252 -; E=0.003 COG: TP0790; COG1033 Membrane proteins related to SecD/SecF; E=2e-06 PFAM: PF01218; Coproporphyrinogen III oxidas; E=0.021.
  
     0.744
RB6127
Hypothetical protein-signal peptide prediction; Best DB hits: PFAM: PF01842; ACT domain; E=0.55 PF00515; TPR Domain; E=0.051.
  
     0.743
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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