STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB12089Iduronate-2-sulfatase; PMID: 8244397 PMID: 8325651 best DB hits: BLAST: gb:AAA16877.1; (L13329) iduronate-2-sulfatase [Homo sapiens]; E=7e-51 gb:AAB33747.1; iduronate-2-sulfatase, IDS {EC 3.1.6.13} [human,; E=3e-50 gb:AAA37880.1; (L07921) iduronate sulfatase [Mus musculus]; E=1e-47 COG: PA0031; COG3119 Arylsulfatase A and related enzymes; E=3e-35 BS_yfnI; COG1368 Phosphoglycerol transferase and related proteins,; E=9e-04 PA0924; COG3083 Predicted hydrolase of alkaline phosphatase; E=0.004 PFAM: PF00884; Sulfatase; E=2e-22. (505 aa)    
Predicted Functional Partners:
RB12092
N-acetylgalactosamine 6-sulfate sulfatase (GALNS); PMID: 94292193 best DB hits: BLAST: gb:AAF30402.1; AF109924_1 (AF109924) sulfatase 1 precursor [Helix; E=1e-36 ddbj:BAA04535.1; (D17629) N-acetylgalactosamine 6-sulfate; E=6e-36 embl:CAA34667.1; (X16679) arylsulfatase [Hemicentrotus; E=4e-32 COG: ydeN; COG3119 Arylsulfatase A and related enzymes; E=2e-28 PFAM: PF00884; Sulfatase; E=8.4e-49.
 
    
0.509
RB12088
Hypothetical protein.
       0.484
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.