STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB12110Hypothetical protein. (56 aa)    
Predicted Functional Partners:
RB12108
Probable response regulatory protein (atoC); PMID: 9665876 PMID: 8346225 best DB hits: BLAST: ddbj:BAB06667.1; (AP001517) two-component response regulator in; E=2e-87 pir:F71315; probable response regulatory protein (atoC) - syphilis; E=1e-85 gb:AAF33506.1; (AF170176) Salmonella typhimurium transcriptional; E=5e-83 COG: BH2948; COG2204 AAA superfamily ATPases with N-terminal receiver; E=2e-88 aq_218_2; COG1221 NtrC family transcriptional regulators, ATPase; E=1e-66 CT468; COG2204 AAA superfamily ATPases with N-terminal receiver; E=5e-66 PFAM: PF00072; Response regulator receiver doma; [...]
       0.509
RB12112
Best DB hits: BLAST: pir:T50995; related to cytoskeleton assembly control protein SLA1; E=6e-07 pir:T37781; probable cytoskeleton assembly control protein - fission; E=5e-05 embl:CAA84826.1; (Z35768) ORF YBL007c [Saccharomyces cerevisiae]; E=0.18.
       0.479
carB
PMID: 8905231 PMID: 6308632 best DB hits: BLAST: swissprot:P00968; CARB_ECOLI CARBAMOYL-PHOSPHATE SYNTHASE LARGE; E=0.0 pir:S76557; carbamoyl-phosphate synthase (glutamine-hydrolyzing) (EC; E=0.0 gb:AAG10606.1; AC008030_6 (AC008030) carbamoyl phosphate synthetase; E=0.0 COG: AF1274; COG0458 Carbamoylphosphate synthase large subunit (split gene; E=0.0 carB; COG0458 Carbamoylphosphate synthase large subunit (split gene in; E=0.0 BU144; COG0458 Carbamoylphosphate synthase large subunit (split gene; E=0.0 PFAM: PF00289; Carbamoyl-phosphate synthase L; E=2.9e-53 PF02222; ATP-grasp domain; E [...]
       0.479
RB12114
Hypothetical protein.
       0.479
dnaQ
Best DB hits: BLAST: swissprot:P13267; DPO3_BACSU DNA POLYMERASE III, ALPHA CHAIN; E=8e-09 pir:JH0232; DNA-directed DNA polymerase (EC 2.7.7.7) III alpha chain; E=8e-09 gb:AAA22666.1; (M22996) polymerase III [Bacillus subtilis]; E=9e-09 COG: BS_polC; COG2176 DNA polymerase III alpha subunit, the Gram-positive; E=8e-10 Rv2191_1; COG0847 DNA polymerase III epsilon subunit (3'-5'; E=2e-09 TM0576; COG2176 DNA polymerase III alpha subunit, the Gram-positive; E=6e-08 PFAM: PF00929; Exonuclease; E=1.2e-18 PF00533; BRCA1 C Terminus (BRCT) domain; E=2.4e-09.
       0.447
pepA
Cytosol aminopeptidase; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.
       0.412
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.