Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
RB12142Hypothetical protein. (103 aa)    
Predicted Functional Partners:
RB12138
Conserved hypothetical protein; PMID: 10086841 best DB hits: BLAST: ddbj:BAB05070.1; (AP001511) BH1351~unknown conserved protein; E=4e-78 swissprot:P54462; YQEV_BACSU HYPOTHETICAL 51.7 KD PROTEIN IN; E=3e-75 pir:G81594; conserved hypothetical protein CP0277 [imported] -; E=3e-67 COG: BH1351; COG0621 Fe-S oxidoreductases family 1; E=3e-79 PFAM: PF00919; Uncharacterized protein famil; E=3.3e-29 PF02143; Radical activating enzyme; E=0.53.
       0.429
RB12139
Conserved hypothetical protein; Best DB hits: BLAST: gb:AAG21389.1; AF302051_3 (AF302051) unknown [Bacillus; E=4e-15 ddbj:BAB07716.1; (AP001520) BH3997~unknown conserved protein in; E=6e-15 pir:C83047; conserved hypothetical protein PA4789 [imported] -; E=1e-12 COG: BH3997; COG1694 Predicted pyrophosphatase; E=6e-16.
       0.429
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.