STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
prcPeriplasmic tail-specific proteinase; PMID: 10984043 PMID: 1729701 best DB hits: BLAST: pir:C83238; periplasmic tail-specific proteinase PA3257 [imported] -; E=5e-91 pir:F82634; tail-specific proteinase XF1823 [imported] - Xylella; E=5e-87 gb:AAK02353.1; (AE006061) Prc [Pasteurella multocida]; E=3e-75 COG: PA3257; COG0793 Periplasmic protease; E=4e-92 PFAM: PF00595; PDZ domain (Also known as DHR or GLG; E=1.1e-09 PF02692; Interphotoreceptor retinoid-binding; E=0.78; Belongs to the peptidase S41A family. (708 aa)    
Predicted Functional Partners:
RB12150
Hypothetical protein.
       0.545
RB12145
Molybdopterin biosynthesis protein MoeB; PMID: 11058132 PMID: 3045084 best DB hits: BLAST: ddbj:BAB05138.1; (AP001512) molybdopterin biosynthesis [Bacillus; E=4e-58 pir:E69845; thiamin biosynthesis homolog yjbU - Bacillus subtilis; E=3e-57 pir:F69659; molybdopterin biosynthesis protein moeB - Bacillus; E=1e-50 COG: BH1419; COG0476 Dinucleotide-utilizing enzymes involved in; E=4e-59 PFAM: PF02254; KTN NAD-binding domain; E=0.29 PF00899; ThiF family; E=1e-46.
  
    0.522
RB5573
Predicted permease; Best DB hits: BLAST: pir:E82830; conserved hypothetical protein XF0250 [imported] -; E=9e-18 gb:AAK02545.1; (AE006082) unknown [Pasteurella multocida]; E=2e-07 pir:B83243; hypothetical protein PA3222 [imported] - Pseudomonas; E=7e-04 COG: XF0250; COG0697 Predicted permeases; E=8e-19 PFAM: PF00892; Integral membrane protein DUF6; E=0.00013.
  
 
   0.460
RB4174
tRNA (ms[2]io[6]A)-hydroxylase; PMID: 8253666 best DB hits: BLAST: pir:B83421; hypothetical protein PA1790 [imported] - Pseudomonas; E=2e-27 swissprot:Q08015; MIAE_SALTY TRNA-(MS[2]IO[6]A)-HYDROXYLASE; E=1e-17 pir:H82142; tRNA-(MS[2]IO[6]A)-hydroxylase VC1910 [imported] -; E=2e-14.
  
     0.425
RB6755
Peptide synthase-putative antibiotic synthesis; PMID: 10910347 best DB hits: BLAST: pir:B82579; peptide synthase XF2276 [imported] - Xylella fastidiosa; E=2e-93 embl:CAC18323.1; (AJ290449) feruloyl-CoA synthetase; E=1e-17 pir:C75364; probable long-chain-fatty-acid--CoA ligase (EC 6.2.1.3); E=3e-15 COG: XF2276; COG1020 Non-ribosomal peptide synthetase modules and related; E=2e-94 DR1692; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases; E=3e-16 VNG1339C; COG0318 Acyl-CoA synthetases (AMP-forming)/AMP-acid; E=1e-15 PFAM: PF00501; AMP-binding enzyme; E=7.3e-05.
  
     0.408
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.