STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB12208Hypothetical protein-transmembrane prediction. (129 aa)    
Predicted Functional Partners:
RB12205
Hypothetical protein; Best DB hits: PFAM: PF01381; Helix-turn-helix; E=8.3e-05.
       0.567
RB12206
Hypothetical protein.
       0.567
RB12202
Probable integrase-recombinase protein; PMID: 9082984 best DB hits: BLAST: swissprot:P55636; Y4RC_RHISN PUTATIVE INTEGRASERECOMBINASE Y4RC; E=1e-04 pir:D72312; integrase-recombinase protein - Thermotoga maritima; E=2e-04 gb:AAF64651.1; AF200320_1 (AF200320) IntA [Bradyrhizobium; E=3e-04 COG: TM0967; COG0582 Integrase; E=2e-05 PFAM: PF00589; Phage integrase family; E=4.8e-15.
       0.444
RB12204
Hypothetical protein.
       0.444
RB12200
Hypothetical protein.
       0.411
RB12201
Hypothetical protein; Best DB hits: BLAST: embl:CAB71199.1; (AL138538) putative sugar hydrolase; E=0.77.
       0.411
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.