STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
osmYProbable osmotically inducible protein Y; PMID: 1317380 best DB hits: BLAST: swissprot:P27291; OSMY_ECOLI OSMOTICALLY INDUCIBLE PROTEIN Y; E=4e-05 gb:AAG59556.1; AE005668_11 (AE005668) hyperosmotically inducible; E=8e-05 gb:AAD56642.1; AF178441_1 (AF178441) Smc22-1 [Sinorhizobium; E=2e-04 COG: osmY; COG2823 Predicted periplasmic or secreted lipoprotein; E=4e-06. (586 aa)    
Predicted Functional Partners:
RB12236
Hypothetical protein-transmembrane prediction.
       0.773
RB10934
Best DB hits: BLAST: pir:F83054; conserved hypothetical protein PA4738 [imported] -; E=1e-05 swissprot:P32691; YJBJ_ECOLI PROTEIN YJBJ ----- pir: D65212; E=2e-05 embl:CAB98302.2; (AL390114) probable 8.3 Kd protein in dinf-qor; E=0.032 COG: PA4738; COG3237 Uncharacterized BCR; E=1e-06; Belongs to the UPF0337 (CsbD) family.
 
    0.664
RB4474
Conserved hypothetical protein; PMID: 8265357 best DB hits: BLAST: pir:F83054; conserved hypothetical protein PA4738 [imported] -; E=3e-06 swissprot:P32691; YJBJ_ECOLI PROTEIN YJBJ ----- pir: D65212; E=2e-05 embl:CAB98302.2; (AL390114) probable 8.3 Kd protein in dinf-qor; E=0.35 COG: PA4738; COG3237 Uncharacterized BCR; E=3e-07; Belongs to the UPF0337 (CsbD) family.
 
    0.647
RB12234
Hypothetical protein.
       0.572
InsA-2
Transposase; PMID: 9043130 best DB hits: BLAST: gb:AAD45539.1; U70376_1 (U70376) InsA [Streptomyces netropsis]; E=5e-33 gb:AAG60893.1; AF322013_12 (AF322013) ID460 [Bradyrhizobium; E=8e-33 ddbj:BAA19966.1; (D63923) transposase [Acetobacter pasteurianus]; E=1e-26.
       0.449
RB12240
Hypothetical protein.
       0.441
RB12323
Conserved hypothetical protein; PMID: 10567266 best DB hits: BLAST: pir:F75410; conserved hypothetical protein - Deinococcus radiodurans; E=0.084.
 
    0.429
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.