STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
InsA-2Transposase; PMID: 9043130 best DB hits: BLAST: gb:AAD45539.1; U70376_1 (U70376) InsA [Streptomyces netropsis]; E=5e-33 gb:AAG60893.1; AF322013_12 (AF322013) ID460 [Bradyrhizobium; E=8e-33 ddbj:BAA19966.1; (D63923) transposase [Acetobacter pasteurianus]; E=1e-26. (433 aa)    
Predicted Functional Partners:
RB11303
Transposase homolog; Best DB hits: BLAST: gb:AAG18661.1; (AE004971) Vng0021h [Halobacterium sp. NRC-1]; E=4e-23 gb:AAG18694.1; (AE004974) Vng0056h [Halobacterium sp. NRC-1]; E=4e-21 pir:T44318; transposase homolog [imported] - Vibrio cholerae -----; E=3e-16.
  
   
 0.776
RB12240
Hypothetical protein.
       0.757
RB3144
Putative integrase/recombinase Y4QK; PMID: 7607529 PMID: 9163424 PMID: 8402918 best DB hits: BLAST: swissprot:P55632; Y4QK_RHISN PUTATIVE INTEGRASERECOMBINASE Y4QK; E=3e-39 swissprot:P55429; Y4EF_RHISN PUTATIVE INTEGRASERECOMBINASE Y4EF; E=1e-32 prf:2115270D; integrase [Weeksella zoohelcum]; E=6e-23 COG: PAB0255; COG0582 Integrase; E=1e-20 PFAM: PF02899; Phage integrase, N-terminal S; E=0.3 PF00589; Phage integrase family; E=8e-31; Belongs to the 'phage' integrase family.
  
   
 0.669
RB4382
Probable diaminopimelate decarboxylase; PMID: 6350601 PMID: 89056708 PMID: 94237165 best DB hits: BLAST: swissprot:P55709; Y4YA_RHISN HYPOTHETICAL 49.9 KD PROTEIN Y4YA; E=3e-40 gb:AAG45731.1; AF229441_2 (AF229441) y4yA [Sinorhizobium fredii]; E=3e-40 gb:AAG45729.1; AF229440_2 (AF229440) y4yA [Sinorhizobium fredii]; E=3e-33 COG: aq_728; COG0019 Diaminopimelate decarboxylase; E=7e-08 PA4839; COG1166 Arginine decarboxylase (spermidine biosynthesis); E=5e-05 XF1116_2; COG0019 Diaminopimelate decarboxylase; E=5e-05 PFAM: PF02784; Pyridoxal-dependent decarboxyla; E=5.9e-08.
  
   
 0.663
RB2182
Transposase; PMID: 8905231 best DB hits: BLAST: pir:S77171; transposase sll1710 - Synechocystis sp. (strain PCC; E=1e-55 gb:AAB72024.1; (U38799) putative transposase [Synechocystis sp.]; E=7e-55 pir:S35005; probable transposase - Acetobacter xylinus insertion; E=1e-54 COG: sll1710; COG3293 Predicted transposase; E=9e-57 PFAM: PF01511; Transposase; E=9e-35 PF01675; Transposase; E=2.1e-31.
  
     0.655
RB9905
Probable transposase; Best DB hits: BLAST: pir:S35005; probable transposase - Acetobacter xylinus insertion; E=5e-56 gb:AAD47597.1; AF144038_1 (AF144038) putative transposase; E=1e-55 pir:S77171; transposase sll1710 - Synechocystis sp. (strain PCC; E=4e-55 COG: sll1710; COG3293 Predicted transposase; E=3e-56 PFAM: PF01511; Transposase; E=9e-35 PF01675; Transposase; E=2.1e-31.
  
     0.650
RB10096
Putative transposase; Best DB hits: BLAST: gb:AAC09305.1; (AF047044) putative transposase [Nostoc sp. PCC; E=2e-41 pir:A32816; hypothetical protein, 33K - Pseudomonas atlantica; E=7e-35 pir:B81886; probable transposase NMA1185 [imported] - Neisseria; E=1e-30 PFAM: PF01548; Transposase; E=2.2e-05 PF02371; Transposase IS116/IS110/IS902; E=1.3e-25.
      
 0.618
rpdD
RNA polymerase sigma factor rpoD; Sigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released.
      
 0.618
grp
RNA-binding protein; PMID: 7541909 best DB hits: BLAST: ddbj:BAA08402.1; (D49424) RNA-binding protein [Anabaena; E=4e-16 pir:S58673; RNA-binding protein RbpC - Anabaena variabilis; E=4e-16 pir:S77263; RNA-binding protein ssr1480 - Synechocystis sp. (strain; E=1e-15 COG: ssr1480; COG0724 RNA-binding proteins (RRM domain); E=1e-16 PFAM: PF00076; RNA recognition motif. (a.k.a. RRM,; E=2.9e-31.
      
 0.618
arsR
Probable metal-dependent regulatory protein; PMID: 8451191 PMID: 8506147 best DB hits: BLAST: pir:E70585; probable transcription regulator Rv2358 - Mycobacterium; E=4e-07 pir:B70850; probable transcription regulator Rv0081 - Mycobacterium; E=5e-07 gb:AAG02351.1; AF210249_10 (AF210249) metal-dependent regulatory; E=1e-06 COG: Rv2358; COG0640 Predicted transcriptional regulators; E=4e-08 PFAM: PF01022; Bacterial regulatory protein, arsR f; E=1.3e-13.
      
 0.618
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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