Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
RB12255Hypothetical protein. (93 aa)    
Predicted Functional Partners:
RB12256
Membrane-associated phospholipid phosphatase; Best DB hits: BLAST: pir:S32217; hypothetical protein 2 - Bacillus megaterium -----; E=4e-16 pir:A82542; conserved hypothetical protein XF2574 [imported] -; E=5e-14 pir:D75404; phosphatidylglycerophosphatase B-related protein -; E=4e-13 COG: XF2574; COG0671 Membrane-associated phospholipid phosphatase; E=5e-15 PFAM: PF01569; PAP2 superfamily; E=1.4e-30.
       0.773
RB12260
Hypothetical protein-signal peptide prediction.
       0.495
RB12251
RNA polymerase ECF-type sigma factor; PMID: 7768826 best DB hits: BLAST: swissprot:P46358; RFAY_XANCP PROBABLE RNA POLYMERASE SIGMA FACTOR; E=2e-22 ddbj:BAB03982.1; (AP001507) RNA polymerase ECF-type sigma factor; E=7e-15 swissprot:Q45585; SIGW_BACSU RNA POLYMERASE SIGMA FACTOR SIGW; E=4e-14 COG: BH0263; COG1595 DNA-directed RNA polymerase specialized sigma; E=6e-16 PFAM: PF00776; Sigma-70 factor (ECF subfamily); E=6.8e-12.
       0.475
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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