STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB12260Hypothetical protein-signal peptide prediction. (81 aa)    
Predicted Functional Partners:
fhp
HMP; PMID: 8557026 PMID: 1594608 best DB hits: BLAST: ddbj:BAA83959.1; (AB024563) HMP [Bacillus halodurans] -----; E=7e-96 swissprot:P39662; HMPA_ALCEU FLAVOHEMOPROTEIN (HEMOGLOBIN-LIKE; E=8e-92 pir:A82854; flavohemoprotein XF0053 [imported] - Xylella fastidiosa; E=8e-83 COG: BH1058_2; COG1018 Flavodoxin reductases (ferredoxin-NADPH; E=1e-53 BH1058_1; COG1017 Hemoglobin-like flavoprotein; E=1e-35 hmp_2; COG1018 Flavodoxin reductases (ferredoxin-NADPH reductases); E=6e-34 PFAM: PF00042; Globin; E=7e-19 PF00970; Oxidoreductase FAD-binding dom; E=2.9e-08 PF01794; Ferric reductase like tra [...]
       0.572
RB12255
Hypothetical protein.
       0.495
RB12256
Membrane-associated phospholipid phosphatase; Best DB hits: BLAST: pir:S32217; hypothetical protein 2 - Bacillus megaterium -----; E=4e-16 pir:A82542; conserved hypothetical protein XF2574 [imported] -; E=5e-14 pir:D75404; phosphatidylglycerophosphatase B-related protein -; E=4e-13 COG: XF2574; COG0671 Membrane-associated phospholipid phosphatase; E=5e-15 PFAM: PF01569; PAP2 superfamily; E=1.4e-30.
       0.495
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.