STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
RB1230Hypothetical protein. (117 aa)    
Predicted Functional Partners:
dpp4
Dipeptidyl peptidase IV; PMID: 7793970 best DB hits: BLAST: pir:S66261; X-Pro dipeptidyl-peptidase (EC 3.4.14.11) -; E=6e-59 ddbj:BAA28265.1; (AB008194) DPP IV [Porphyromonas gingivalis]; E=2e-54 gb:AAC46184.1; (AF026511) dipeptidyl peptidase IV [Porphyromonas; E=7e-54 COG: YHR028c; COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases; E=2e-30 BH0879; COG2267 Lysophospholipase; E=0.002 PH0863; COG1506 Dipeptidyl aminopeptidases/acylaminoacyl-peptidases; E=0.002 PFAM: PF00930; Dipeptidyl peptidase IV (DPP IV); E=5.3e-44 PF00326; Prolyl oligopeptidase family; E=0.84.
       0.773
lpd
Dihydrolipoamide dehydrogenase; PMID: 6352260 PMID: 2211531 best DB hits: BLAST: pir:A82753; dihydrolipoamide dehydrogenase XF0868 [imported] -; E=1e-102 swissprot:O50286; DLDH_VIBPA DIHYDROLIPOAMIDE DEHYDROGENASE (E3; E=1e-102 swissprot:P00391; DLDH_ECOLI DIHYDROLIPOAMIDE DEHYDROGENASE (E3; E=1e-101 COG: XF0868_2; COG1249 Dihydrolipoamide dehydrogenase/glutathione; E=1e-103 PFAM: PF02032; Phytoene dehydrogenase related; E=0.00021 PF00070; Pyridine nucleotide-disulphide; E=2.6e-75 PF02852; Pyridine nucleotide-disulphide; E=8.6e-41.
       0.732
rpsD
30S ribosomal protein S4; One of the primary rRNA binding proteins, it binds directly to 16S rRNA where it nucleates assembly of the body of the 30S subunit.
       0.506
Your Current Organism:
Rhodopirellula baltica
NCBI taxonomy Id: 243090
Other names: Pirellula sp. 1, R. baltica SH 1, Rhodopirellula baltica SH 1, Rhodopirellula baltica str. SH 1, Rhodopirellula baltica strain SH 1
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.